RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 AEBP2Q6ZN18 517 aaPredicted RBP22.07■■□□□ 1.12
LIMA1-205ENST00000550592 CHIC1Q5VXU3 224 aa21.97■■□□□ 1.11
LIMA1-205ENST00000550592 PHF23Q9BUL5 403 aaPredicted RBP19.37■□□□□ 0.69
LIMA1-205ENST00000550592 SENP3Q9H4L4 574 aaPredicted RBP18.65■□□□□ 0.58
LIMA1-205ENST00000550592 PLPPR3Q6T4P5 718 aa18.02■□□□□ 0.48
LIMA1-205ENST00000550592 FOXD1Q16676 465 aa17.26■□□□□ 0.35
LIMA1-205ENST00000550592 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
LIMA1-205ENST00000550592 ADRA2BP18089 450 aa16.94■□□□□ 0.3
LIMA1-205ENST00000550592 PIAS4Q8N2W9 510 aaPredicted RBP16.35■□□□□ 0.21
LIMA1-205ENST00000550592 KCNA4P22459 653 aa16.02■□□□□ 0.16
LIMA1-205ENST00000550592 PPP4R3CPQ6ZMV5 832 aa15.93■□□□□ 0.14
LIMA1-205ENST00000550592 MSH5O43196 834 aa15.75■□□□□ 0.11
LIMA1-205ENST00000550592 NCBP3Q53F19 620 aaKnown RBP15.63■□□□□ 0.09
LIMA1-205ENST00000550592 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
LIMA1-205ENST00000550592 NPM3O75607 178 aaKnown RBP15.4■□□□□ 0.06
LIMA1-205ENST00000550592 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
LIMA1-205ENST00000550592 EHMT2Q96KQ7 1210 aa15.33■□□□□ 0.04
LIMA1-205ENST00000550592 SLC4A1APQ9BWU0 796 aaKnown RBP15.33■□□□□ 0.04
LIMA1-205ENST00000550592 MAPK8IP2Q13387 824 aaPredicted RBP15.25■□□□□ 0.03
LIMA1-205ENST00000550592 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
LIMA1-205ENST00000550592 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
LIMA1-205ENST00000550592 DNAJC5BQ9UF47 199 aa14.98□□□□□ -0.01
LIMA1-205ENST00000550592 DMRT2Q9Y5R5 561 aa14.97□□□□□ -0.01
LIMA1-205ENST00000550592 HOXD11P31277 338 aaPredicted RBP14.84□□□□□ -0.03
LIMA1-205ENST00000550592 ZBTB22O15209 634 aa14.76□□□□□ -0.05
LIMA1-205ENST00000550592 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
LIMA1-205ENST00000550592 POTEDQ86YR6 584 aa14.56□□□□□ -0.08
LIMA1-205ENST00000550592 SLC4A2P04920 1241 aa14.46□□□□□ -0.09
LIMA1-205ENST00000550592 DCAF8L1A6NGE4 600 aa14.22□□□□□ -0.13
LIMA1-205ENST00000550592 MYCNP04198 464 aaPredicted RBP14.21□□□□□ -0.13
LIMA1-205ENST00000550592 ATXN8OSP0DMR3 200 aa14.13□□□□□ -0.15
LIMA1-205ENST00000550592 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIMA1-205ENST00000550592 U3KPZ7 1027 aaPredicted RBP13.94□□□□□ -0.18
LIMA1-205ENST00000550592 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.91□□□□□ -0.18
LIMA1-205ENST00000550592 HNRNPUL2Q1KMD3 747 aaKnown RBP13.91□□□□□ -0.18
LIMA1-205ENST00000550592 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
LIMA1-205ENST00000550592 ATF5Q9Y2D1 282 aaPredicted RBP13.81□□□□□ -0.2
LIMA1-205ENST00000550592 APLP2Q06481 763 aa13.65□□□□□ -0.22
LIMA1-205ENST00000550592 RNF39Q9H2S5 420 aa13.56□□□□□ -0.24
LIMA1-205ENST00000550592 ZNF219Q9P2Y4 722 aaPredicted RBP13.56□□□□□ -0.24
LIMA1-205ENST00000550592 FKBP8Q14318 412 aa13.52□□□□□ -0.25
LIMA1-205ENST00000550592 C1QBPQ07021 282 aaKnown RBP13.42□□□□□ -0.26
LIMA1-205ENST00000550592 SPINK5Q9NQ38 1064 aaPredicted RBP13.41□□□□□ -0.26
LIMA1-205ENST00000550592 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
LIMA1-205ENST00000550592 CAPN15O75808 1086 aa13.31□□□□□ -0.28
LIMA1-205ENST00000550592 POLA2Q14181 598 aa13.26□□□□□ -0.29
LIMA1-205ENST00000550592 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
LIMA1-205ENST00000550592 FBLN2P98095 1184 aa13.18□□□□□ -0.3
LIMA1-205ENST00000550592 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
LIMA1-205ENST00000550592 ABCB7O75027 752 aa13.09□□□□□ -0.31
LIMA1-205ENST00000550592 ZBTB12Q9Y330 459 aaPredicted RBP13.08□□□□□ -0.32
LIMA1-205ENST00000550592 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
LIMA1-205ENST00000550592 RTN4Q9NQC3 1192 aaKnown RBP13.04□□□□□ -0.32
LIMA1-205ENST00000550592 DSG3P32926 999 aa13.03□□□□□ -0.32
LIMA1-205ENST00000550592 PROM2Q8N271 834 aa13.02□□□□□ -0.33
LIMA1-205ENST00000550592 FBXO3Q9UK99 471 aa12.96□□□□□ -0.33
LIMA1-205ENST00000550592 CACNB1Q02641 598 aaPredicted RBP12.86□□□□□ -0.35
LIMA1-205ENST00000550592 SPDYE2BA6NHP3 402 aa12.77□□□□□ -0.37
LIMA1-205ENST00000550592 SPDYE6P0CI01 402 aa12.77□□□□□ -0.37
LIMA1-205ENST00000550592 SPDYE2Q495Y8 402 aa12.77□□□□□ -0.37
LIMA1-205ENST00000550592 ZNF692Q9BU19 519 aaPredicted RBP12.77□□□□□ -0.37
LIMA1-205ENST00000550592 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
LIMA1-205ENST00000550592 VASPP50552 380 aaPredicted RBP12.75□□□□□ -0.37
LIMA1-205ENST00000550592 SSUH2Q9Y2M2 353 aa12.72□□□□□ -0.37
LIMA1-205ENST00000550592 IFNLR1Q8IU57 520 aaPredicted RBP12.63□□□□□ -0.39
LIMA1-205ENST00000550592 PABPN1Q86U42 306 aaKnown RBP eCLIP12.6□□□□□ -0.39
LIMA1-205ENST00000550592 STAG3Q9UJ98 1225 aa12.59□□□□□ -0.39
LIMA1-205ENST00000550592 SLC24A1O60721 1099 aa12.46□□□□□ -0.41
LIMA1-205ENST00000550592 KLHL34Q8N239 644 aa12.42□□□□□ -0.42
LIMA1-205ENST00000550592 PLCD3Q8N3E9 789 aa12.41□□□□□ -0.42
LIMA1-205ENST00000550592 MIER1Q8N108 512 aa12.4□□□□□ -0.42
LIMA1-205ENST00000550592 SPOCK2Q92563 424 aa12.4□□□□□ -0.42
LIMA1-205ENST00000550592 RBM42Q9BTD8 480 aaKnown RBP12.4□□□□□ -0.42
LIMA1-205ENST00000550592 PKD2Q13563 968 aa12.38□□□□□ -0.43
LIMA1-205ENST00000550592 AKT1S1Q96B36 256 aa12.35□□□□□ -0.43
LIMA1-205ENST00000550592 PLEKHG5O94827 1062 aa12.29□□□□□ -0.44
LIMA1-205ENST00000550592 SPDYE1Q8NFV5 336 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-205ENST00000550592 ZBTB47Q9UFB7 747 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-205ENST00000550592 REM2Q8IYK8 340 aaPredicted RBP12.23□□□□□ -0.45
LIMA1-205ENST00000550592 ECM2O94769 699 aaPredicted RBP12.19□□□□□ -0.46
LIMA1-205ENST00000550592 DCAF8L2P0C7V8 631 aa12.16□□□□□ -0.46
LIMA1-205ENST00000550592 CLEC11AQ9Y240 323 aa12.16□□□□□ -0.46
LIMA1-205ENST00000550592 PRR29P0C7W0 189 aa12.15□□□□□ -0.46
LIMA1-205ENST00000550592 CREBZFQ9NS37 354 aa12.1□□□□□ -0.47
LIMA1-205ENST00000550592 CIZ1Q9ULV3 898 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-205ENST00000550592 PLCB2Q00722 1185 aa12.09□□□□□ -0.47
LIMA1-205ENST00000550592 RGL2O15211 777 aa12.07□□□□□ -0.48
LIMA1-205ENST00000550592 NUBP1P53384 320 aa12.07□□□□□ -0.48
LIMA1-205ENST00000550592 PITPNM1O00562 1244 aa12.06□□□□□ -0.48
LIMA1-205ENST00000550592 MNX1P50219 401 aaPredicted RBP12.06□□□□□ -0.48
LIMA1-205ENST00000550592 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
LIMA1-205ENST00000550592 GSE1Q14687 1217 aa12.03□□□□□ -0.48
LIMA1-205ENST00000550592 NPM1P06748 294 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIMA1-205ENST00000550592 BBXQ8WY36 941 aaPredicted RBP11.98□□□□□ -0.49
LIMA1-205ENST00000550592 DCAF8Q5TAQ9 597 aa11.96□□□□□ -0.49
LIMA1-205ENST00000550592 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.93□□□□□ -0.5
LIMA1-205ENST00000550592 FAM212AQ96EL1 285 aa11.92□□□□□ -0.5
LIMA1-205ENST00000550592 RASEFQ8IZ41 740 aa11.9□□□□□ -0.5
LIMA1-205ENST00000550592 RNF25Q96BH1 459 aaPredicted RBP11.88□□□□□ -0.51
LIMA1-205ENST00000550592 CHRM1P11229 460 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms