RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 Q4G0T1 1027 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 FAM47CQ5HY64 1035 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 HABP4Q5JVS0 413 aaKnown RBP8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 NFRKBQ6P4R8 1299 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 ABHD15Q6UXT9 468 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 KRT25Q7Z3Z0 450 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 NLRX1Q86UT6 975 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 CEP89Q96ST8 783 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 SLC9A2Q9UBY0 812 aa8.18□□□□□ -1.1
TOPBP1-207ENST00000509162 IPO5O00410 1097 aaKnown RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 TREHO43280 583 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 AP1G2O75843 785 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CFHP08603 1231 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 SUPT20HL2P0C7V6 817 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CSF2RAP15509 400 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 BMP8BP34820 402 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 KRT2P35908 639 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 TOB1P50616 345 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CCL23P55773 120 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CHMP4BP1P59074 171 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 USP46P62068 366 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 SETQ01105 290 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 MGAT3Q09327 533 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 PLCB4Q15147 1175 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 SHHQ15465 462 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 LETM2Q2VYF4 491 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 RASIP1Q5U651 963 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 KCNV1Q6PIU1 500 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CPLX2Q6PUV4 134 aaKnown RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 MOXD1Q6UVY6 613 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 FAM177A1Q8N128 213 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 FBXO18Q8NFZ0 1043 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 GLMNQ92990 594 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 ZSCAN31Q96LW9 406 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 LLPHQ9BRT6 129 aaKnown RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 GLT8D2Q9H1C3 349 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 MLXIPQ9HAP2 919 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 TMEM39AQ9NV64 488 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 CXXC1Q9P0U4 656 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 NR2E3Q9Y5X4 410 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 MYH15Q9Y2K3 1946 aa8.17□□□□□ -1.1
TOPBP1-207ENST00000509162 MBLAC1A4D2B0 266 aaPredicted RBP8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 H3BRB1 525 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 HOXA2O43364 376 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 CHMP2AO43633 222 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ZEB2O60315 1214 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 EIF5BO60841 1220 aaKnown RBP8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 NBNO60934 754 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 PPFIA4O75335 1185 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ARHGEF15O94989 841 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 TIMP1P01033 207 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ACRP10323 421 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 GJB2P29033 226 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ABL2P42684 1182 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 GCGRP47871 477 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 PTPN11Q06124 597 aaPredicted RBP8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 LAPTM4AQ15012 233 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 CSPP1Q1MSJ5 1256 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 MROH7Q68CQ1 1323 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 GALNT17Q6IS24 598 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 BLOC1S3Q6QNY0 202 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 MICAL3Q7RTP6 2002 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 NEK8Q86SG6 692 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 SERINC5Q86VE9 423 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 LINC01465Q8N7H1 131 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 BICD2Q8TD16 824 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ADAMTS19Q8TE59 1207 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 AFAP1L1Q8TED9 768 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 MTMR9Q96QG7 549 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 ZNF577Q9BSK1 485 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 HIPK3Q9H422 1215 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 TUT1Q9H6E5 874 aaKnown RBP8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 EHMT1Q9H9B1 1298 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 PRM3Q9NNZ6 103 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 SETD4Q9NVD3 440 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 DDX25Q9UHL0 483 aaKnown RBP8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 TRANK1O15050 2925 aa8.16□□□□□ -1.1
TOPBP1-207ENST00000509162 COL4A4P53420 1690 aaPredicted RBP8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 NOP56O00567 594 aaKnown RBP8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 KPNA6O60684 536 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 CKBP12277 381 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 USP11P51784 963 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 GRIK4Q16099 956 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 IL17AQ16552 155 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 PTGISQ16647 500 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 TMEM240Q5SV17 173 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 ZNF618Q5T7W0 954 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 PPP4R3AQ6IN85 833 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 MFSD5Q6N075 450 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 SPRED2Q7Z698 418 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 C4orf32Q8N8J7 132 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 LRRC15Q8TF66 581 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 LINC01599Q8WXQ3 324 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 SEPT1Q8WYJ6 367 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 VTI1AQ96AJ9 217 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 CDHR1Q96JP9 859 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 C8orf76Q96K31 380 aa8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 CALR3Q96L12 384 aaKnown RBP8.15□□□□□ -1.1
TOPBP1-207ENST00000509162 PRKD2Q9BZL6 878 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms