RNA–Protein interactions for RNA: ENST00000486116.5

PTPN7-213, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 4

Gene PTPN7, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-213	ENST00000486116	IGSF9B	Q9UPX0	1349 aa		11.24	□□□□□ -0.61
PTPN7-213	ENST00000486116	EVPL	Q92817	2033 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	EPCAM	P16422	314 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	CCND2	P30279	289 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	TMEM62	Q0P6H9	643 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	SMC1A	Q14683	1233 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	GRIK4	Q16099	956 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	TMEM266	Q2M3C6	531 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	GPATCH4	Q5T3I0	446 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	TMC5	Q6UXY8	1006 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	LRRC55	Q6ZSA7	311 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	OTOP3	Q7RTS5	596 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	DZANK1	Q9NVP4	752 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	IGSF9	Q9P2J2	1179 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	ANGPTL2	Q9UKU9	493 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	SMG5	Q9UPR3	1016 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	SIT1	Q9Y3P8	196 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	TRPV2	Q9Y5S1	764 aa		11.23	□□□□□ -0.61
PTPN7-213	ENST00000486116	SMARCA5	O60264	1052 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	N4BP1	O75113	896 aa	Known RBP	11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	LRRN2	O75325	713 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	FGFR1	P11362	822 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	IGF2R	P11717	2491 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	HOXA13	P31271	388 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	SP4	Q02446	784 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	NEDD9	Q14511	834 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	ZNF528	Q3MIS6	628 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	RRP12	Q5JTH9	1297 aa	Known RBP	11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	TSHZ3	Q63HK5	1081 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	PHLDB3	Q6NSJ2	640 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	KCNT2	Q6UVM3	1135 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	CCDC149	Q6ZUS6	474 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	EPC1	Q9H2F5	836 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	ECHDC1	Q9NTX5	307 aa		11.22	□□□□□ -0.61
PTPN7-213	ENST00000486116	SPATA31C2	B4DYI2	1134 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116		C9IYK1	514 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	SLC30A4	O14863	429 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	MARK3	P27448	753 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	PML	P29590	882 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	MRPS9	P82933	396 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	IER5	Q5VY09	327 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	GPR149	Q86SP6	731 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	PJA1	Q8NG27	643 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	GPR152	Q8TDT2	470 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	SLC22A17	Q8WUG5	538 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	SECISBP2L	Q93073	1101 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	ZNF558	Q96NG5	402 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	FOXQ1	Q9C009	403 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	JMJD4	Q9H9V9	463 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	RGS18	Q9NS28	235 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	TOMM22	Q9NS69	142 aa		11.21	□□□□□ -0.61
PTPN7-213	ENST00000486116	PPP1R11	O60927	126 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	LILRB5	O75023	590 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	HMMR	O75330	724 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	SRF	P11831	508 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	PPM1A	P35813	382 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	TCF7	P36402	384 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	IGBP1	P78318	339 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	KRT17	Q04695	432 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	NFX1	Q12986	1120 aa	Known RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	ZMYM1	Q5SVZ6	1142 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	VPS53	Q5VIR6	699 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	SLC44A3	Q8N4M1	653 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	ZBTB44	Q8NCP5	570 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	AUTS2	Q8WXX7	1259 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	BORCS6	Q96GS4	357 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	TTC14	Q96N46	770 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	INPP4A	Q96PE3	977 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	ADAM2	Q99965	735 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	CELF4	Q9BZC1	486 aa	Known RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	ARHGEF3	Q9NR81	526 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	RNF19A	Q9NV58	838 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	FBXO4	Q9UKT5	387 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	PCDHGA2	Q9Y5H1	932 aa		11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	11.2	□□□□□ -0.62
PTPN7-213	ENST00000486116	FRMPD4	Q14CM0	1322 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	KDM3A	Q9Y4C1	1321 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116		M0QZ92	97 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	RPLP2	P05387	115 aa	Known RBP	11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	PROS1	P07225	676 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	CA8	P35219	290 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	SHC2	P98077	582 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	GNPTAB	Q3T906	1256 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	SLC24A5	Q71RS6	500 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	SLC39A11	Q8N1S5	342 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	NETO1	Q8TDF5	533 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	NELL1	Q92832	810 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	CASD1	Q96PB1	797 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	VAT1L	Q9HCJ6	419 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	C1orf112	Q9NSG2	853 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	TMEM161A	Q9NX61	479 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	MAP3K20	Q9NYL2	800 aa	Known RBP	11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	SPG21	Q9NZD8	308 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	PCDHA1	Q9Y5I3	950 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	WDFY3	Q8IZQ1	3526 aa		11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	FLNB	O75369	2602 aa	Known RBP	11.19	□□□□□ -0.62
PTPN7-213	ENST00000486116	NBEA	Q8NFP9	2946 aa		11.18	□□□□□ -0.62
PTPN7-213	ENST00000486116	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms