RNA–Protein interactions for RNA: YMR240C

CUS1, Transcript of Protein required for assembly of U2 snRNP into the spliceosome, yeast

Gene CUS1, Length 1,311 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUS1	YMR240C	SPT15	P13393	240 aa	Known RBP	4.08	□□□□□ -1.76
CUS1	YMR240C	THR4	P16120	514 aa	Known RBP	4.08	□□□□□ -1.76
CUS1	YMR240C	CPR3	P25719	182 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	KAR9	P32526	644 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	YBR139W	P38109	508 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	SHE4	P51534	789 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	MPS2	P53159	387 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	RET3	P53600	189 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	COS1	P53822	381 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	PRM1	P53835	661 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	MGR3	Q04472	501 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	YPR078C	Q06813	372 aa		4.08	□□□□□ -1.76
CUS1	YMR240C	TSR1	Q07381	788 aa	Known RBP	4.08	□□□□□ -1.76
CUS1	YMR240C	STE3	P06783	470 aa		4.07	□□□□□ -1.76
CUS1	YMR240C	SSC1	P0CS90	654 aa	Known RBP	4.07	□□□□□ -1.76
CUS1	YMR240C	SBE22	P38814	852 aa		4.07	□□□□□ -1.76
CUS1	YMR240C	COX14	P39103	70 aa		4.07	□□□□□ -1.76
CUS1	YMR240C	RRP46	P53256	223 aa	Predicted RBP	4.07	□□□□□ -1.76
CUS1	YMR240C	IMP4	P53941	290 aa	Known RBP	4.07	□□□□□ -1.76
CUS1	YMR240C	STF1	P01098	86 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	ARO2	P28777	376 aa	Known RBP	4.06	□□□□□ -1.76
CUS1	YMR240C	MSK1	P32048	576 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	EFB1	P32471	206 aa	Known RBP	4.06	□□□□□ -1.76
CUS1	YMR240C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
CUS1	YMR240C	YBL059W	P34224	193 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	YIL029C	P40538	142 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	REE1	P40893	198 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	MDE1	P47095	244 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	SCS3	P53012	380 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	ELP3	Q02908	557 aa	Known RBP	4.06	□□□□□ -1.76
CUS1	YMR240C	REX3	Q12090	404 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	YRM1	Q12340	786 aa		4.06	□□□□□ -1.76
CUS1	YMR240C	SAG1	P20840	650 aa		4.05	□□□□□ -1.76
CUS1	YMR240C	NDT80	P38830	627 aa		4.05	□□□□□ -1.76
CUS1	YMR240C	SNL1	P40548	159 aa		4.05	□□□□□ -1.76
CUS1	YMR240C	MRM2	P53123	320 aa		4.05	□□□□□ -1.76
CUS1	YMR240C	CWC25	P53854	179 aa	Known RBP	4.05	□□□□□ -1.76
CUS1	YMR240C	ADA2	Q02336	434 aa		4.05	□□□□□ -1.76
CUS1	YMR240C	YTH1	Q06102	208 aa	Predicted RBP	4.05	□□□□□ -1.76
CUS1	YMR240C	MAS1	P10507	462 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	MAS2	P11914	482 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	MRPL8	P22353	238 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	POP5	P28005	173 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	HMX1	P32339	317 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	TIR2	P33890	251 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	SRB2	P34162	210 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	GPX2	P38143	162 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	GEP4	P38812	185 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	PTH1	P38876	190 aa	Known RBP	4.04	□□□□□ -1.76
CUS1	YMR240C	LCP5	P40079	357 aa	Predicted RBP	4.04	□□□□□ -1.76
CUS1	YMR240C	LYS12	P40495	371 aa	Known RBP	4.04	□□□□□ -1.76
CUS1	YMR240C	SPG5	P42933	373 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	HST1	P53685	503 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	NUP116	Q02630	1113 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	YMR310C	Q04867	317 aa	Predicted RBP	4.04	□□□□□ -1.76
CUS1	YMR240C	LOT6	Q07923	191 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	YOR387C	Q08910	206 aa		4.04	□□□□□ -1.76
CUS1	YMR240C	SUP35	P05453	685 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	CBS2	P14905	389 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	DBR1	P24309	405 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	DEG1	P31115	442 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	DPH5	P32469	300 aa	Predicted RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	MNS1	P32906	549 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	PTK1	P36002	662 aa	Predicted RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	RFS1	P38234	210 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	YHR122W	P38829	231 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	ABM1	P47146	123 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	MTQ1	P53944	314 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	PRO2	P54885	456 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	YMR102C	Q03177	834 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	PRM6	Q04705	352 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	SPH1	Q06160	661 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	SMC5	Q08204	1093 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	YOR012W	Q12351	137 aa		4.03	□□□□□ -1.76
CUS1	YMR240C	AIM45	Q12480	344 aa	Known RBP	4.03	□□□□□ -1.76
CUS1	YMR240C	RPS8A	P0CX39	200 aa	Known RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	RPS8B	P0CX40	200 aa	Known RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	CLN3	P13365	580 aa		4.02	□□□□□ -1.77
CUS1	YMR240C	GRR1	P24814	1151 aa		4.02	□□□□□ -1.77
CUS1	YMR240C	NAM9	P27929	486 aa		4.02	□□□□□ -1.77
CUS1	YMR240C	RAD5	P32849	1169 aa	Predicted RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	CCT4	P39078	528 aa	Known RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	TRM112	P53738	135 aa	Predicted RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	TLG2	Q08144	397 aa		4.02	□□□□□ -1.77
CUS1	YMR240C	YGK3	Q12222	375 aa	Predicted RBP	4.02	□□□□□ -1.77
CUS1	YMR240C	FSH3	Q99369	266 aa		4.02	□□□□□ -1.77
CUS1	YMR240C	PIS1	P06197	220 aa	Known RBP	4.01	□□□□□ -1.77
CUS1	YMR240C	DAL2	P25335	343 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	VAM7	P32912	316 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	LIN1	P38852	340 aa	Predicted RBP	4.01	□□□□□ -1.77
CUS1	YMR240C	MAM33	P40513	266 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	YPI1	P43587	155 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	ALF1	P53904	254 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	AIM33	Q04516	312 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	HRI1	Q05905	244 aa	Known RBP	4.01	□□□□□ -1.77
CUS1	YMR240C	TMS1	Q12116	473 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	EAF3	Q12432	401 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	AHC1	Q12433	566 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	YCR024C-B	Q3E7Z8	88 aa		4.01	□□□□□ -1.77
CUS1	YMR240C	MEX67	Q99257	599 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 29.9 ms