RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AFG2	YLR397C	CUS2	P53830	285 aa	Predicted RBP	7	□□□□□ -1.29
AFG2	YLR397C	MRI1	Q06489	411 aa	Known RBP	7	□□□□□ -1.29
AFG2	YLR397C	YPR147C	Q06522	304 aa	Known RBP	7	□□□□□ -1.29
AFG2	YLR397C	LAP2	Q10740	671 aa		7	□□□□□ -1.29
AFG2	YLR397C	AFI1	Q99222	893 aa		7	□□□□□ -1.29
AFG2	YLR397C	PRB1	P09232	635 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ELO2	P25358	347 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	RHB1	P25378	209 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	MOT1	P32333	1867 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	CAT2	P32796	670 aa	Known RBP	6.99	□□□□□ -1.29
AFG2	YLR397C	GMH1	P36125	273 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ARN1	P38731	627 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ICP55	P40051	511 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	NIT2	P47016	307 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ATF2	P53296	535 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ATG20	Q07528	640 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	RRG7	Q08774	242 aa	Predicted RBP	6.99	□□□□□ -1.29
AFG2	YLR397C	SLH1	P53327	1967 aa	Known RBP	6.99	□□□□□ -1.29
AFG2	YLR397C	DST1	P07273	309 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	YCL002C	P25565	263 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	GPT2	P36148	743 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	PCL7	P40186	285 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	MND2	P40577	368 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	ZIM17	P42844	174 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	KTR6	P54070	446 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	PPN1	Q04119	674 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	BCH1	Q05029	724 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	NEJ1	Q06148	342 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	BDS1	Q08347	646 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	YLL058W	Q12198	575 aa		6.99	□□□□□ -1.29
AFG2	YLR397C	YEL076C-A	P0CX16	216 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YLR464W	P0CX17	216 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	PRO3	P32263	286 aa	Known RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	SHP1	P34223	423 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	HSL7	P38274	827 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	STS1	P38637	319 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	CYC2	P38909	366 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	RBG1	P39729	369 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YEL076C	P39971	216 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	AAD14	P42884	376 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	SLS1	P42900	643 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	MPS3	P47069	682 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	MRX6	P48564	524 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YGL138C	P53122	345 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YNL095C	P53932	642 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YVH1	Q02256	364 aa	Known RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	YPL119C-A	Q3E751	87 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	HRP1	Q99383	534 aa	Known RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	YIL177C	P40434	1758 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YJL225C	P40889	1758 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	PHO80	P20052	293 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	UTR1	P21373	530 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	DCC1	P25559	380 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	ACB1	P31787	87 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	GCD11	P32481	527 aa	Known RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	TCA17	P32613	152 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	MRP4	P32902	394 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	PHO11	P35842	467 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YBL029W	P38201	376 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	PHO12	P38693	467 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	IKI1	P38874	309 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	FAD1	P38913	306 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	MMF1	P40185	145 aa	Known RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	LOH1	P47055	219 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YGL159W	P53110	370 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	RHO4	Q00246	291 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	ARG5,6	Q01217	863 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	LDB18	Q07887	179 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	PML1	Q07930	204 aa	Predicted RBP	6.98	□□□□□ -1.29
AFG2	YLR397C	HRD1	Q08109	551 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	YPL199C	Q08954	240 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	WIP1	Q2V2P8	89 aa		6.98	□□□□□ -1.29
AFG2	YLR397C	RPL4A	P10664	362 aa	Known RBP	6.97	□□□□□ -1.29
AFG2	YLR397C	PRP45	P28004	379 aa	Predicted RBP	6.97	□□□□□ -1.29
AFG2	YLR397C	BCS1	P32839	456 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	MRPL15	P36523	253 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	AVT5	P38176	459 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	GET2	P40056	285 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	HIS6	P40545	261 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	SKP2	P42843	763 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	DPB11	P47027	764 aa	Predicted RBP	6.97	□□□□□ -1.29
AFG2	YLR397C	VPS70	P47161	811 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	RPL4B	P49626	362 aa	Known RBP	6.97	□□□□□ -1.29
AFG2	YLR397C	GUP1	P53154	560 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	ECM9	Q02202	377 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	ODC1	Q03028	310 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	YDR248C	Q03786	193 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	TRM12	Q04235	462 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	PEX12	Q04370	399 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	SKG3	Q06315	1026 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	PRM4	Q12498	284 aa		6.97	□□□□□ -1.29
AFG2	YLR397C	GAL80	P04387	435 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	MIH1	P23748	554 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	YCR102C	P25608	368 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	BUB3	P26449	341 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	WBP1	P33767	430 aa	Known RBP	6.96	□□□□□ -1.29
AFG2	YLR397C	ATG8	P38182	117 aa	RIP-Chip data	6.96	□□□□□ -1.29	not detected
AFG2	YLR397C	TOS1	P38288	455 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	PTP3	P40048	928 aa		6.96	□□□□□ -1.29
AFG2	YLR397C	SCC4	P40090	624 aa		6.96	□□□□□ -1.29

Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms