RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	GIS1	Q03833	894 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	YDL218W	Q07629	317 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	YLL056C	Q12177	298 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	GIS3	Q12418	502 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	RSF2	P46974	1380 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	RPL24A	P04449	155 aa	Known RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	RPL12A	P0CX53	165 aa	Known RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	RPL12B	P0CX54	165 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	DEG1	P31115	442 aa	Known RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	BMH2	P34730	273 aa	Known RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	CAB3	P36076	571 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	FET3	P38993	636 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	HXT9	P40885	567 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	CDC40	P40968	455 aa	Predicted RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	BNA6	P43619	295 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	LOH1	P47055	219 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	MRK1	P50873	501 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	PIG1	Q06216	648 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	MDM36	Q06820	579 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	DNL4	Q08387	944 aa	Predicted RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	RKM5	Q12367	367 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	FSH3	Q99369	266 aa		4.1	□□□□□ -1.75
SOF1	YLL011W	ADE6	P38972	1358 aa	Known RBP	4.1	□□□□□ -1.75
SOF1	YLL011W	URB1	P34241	1764 aa	Known RBP	4.09	□□□□□ -1.75
SOF1	YLL011W	RPB8	P20436	146 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	RPS2	P25443	254 aa	Known RBP	4.09	□□□□□ -1.75
SOF1	YLL011W	GSY2	P27472	705 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	ACH1	P32316	526 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	ARO4	P32449	370 aa	Known RBP	4.09	□□□□□ -1.75
SOF1	YLL011W	IMP3	P32899	183 aa	Predicted RBP	4.09	□□□□□ -1.75
SOF1	YLL011W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
SOF1	YLL011W	IML3	P38265	245 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	YAL037W	P39728	267 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	MSS2	P40990	351 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	YDL186W	P48568	277 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	CGR1	P53188	120 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	PCP1	P53259	346 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	SOL4	P53315	255 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	RET3	P53600	189 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	MPS1	P54199	764 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	SMP3	Q04174	516 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	YPR022C	Q12139	1133 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	APC2	Q12440	853 aa		4.09	□□□□□ -1.75
SOF1	YLL011W	GDH1	P07262	454 aa	Known RBP	4.08	□□□□□ -1.76
SOF1	YLL011W	RPS16A	P0CX51	143 aa	Known RBP	4.08	□□□□□ -1.76
SOF1	YLL011W	RPS16B	P0CX52	143 aa	Known RBP	4.08	□□□□□ -1.76
SOF1	YLL011W	DAL2	P25335	343 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	ERG1	P32476	496 aa	Known RBP	4.08	□□□□□ -1.76
SOF1	YLL011W	YMR262W	P38430	313 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	SHQ1	P40486	507 aa	Predicted RBP	4.08	□□□□□ -1.76
SOF1	YLL011W	PHB2	P50085	310 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	RHO4	Q00246	291 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	YPL068C	Q02749	293 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	URH1	Q04179	340 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	TMN2	Q04562	672 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	BUR2	Q05949	395 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	DIC1	Q06143	298 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	GPN3	Q06543	272 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	ASA1	Q06822	443 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	SSK1	Q07084	712 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	BSC6	Q08280	497 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	AFT2	Q08957	416 aa		4.08	□□□□□ -1.76
SOF1	YLL011W	CKI1	P20485	582 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	GPI12	P23797	304 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	SAT4	P25333	603 aa	Known RBP	4.07	□□□□□ -1.76
SOF1	YLL011W	CTR86	P25355	563 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	CSM1	P25651	190 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	PRO3	P32263	286 aa	Known RBP	4.07	□□□□□ -1.76
SOF1	YLL011W	YMC1	P32331	307 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	SKN1	P33336	771 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	YKL097C	P34245	136 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	SIP3	P38717	1229 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	ARN1	P38731	627 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	YER085C	P40058	173 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	DSE1	P40077	573 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	FAU1	P40099	211 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	YJL118W	P47022	219 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	STE24	P47154	453 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	GPI15	P53961	229 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	KIN4	Q01919	800 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	LGE1	Q02796	332 aa	Known RBP	4.07	□□□□□ -1.76
SOF1	YLL011W	SRL4	Q03085	281 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	COX20	Q04935	205 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	COQ11	Q05892	277 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	CTS2	Q06350	511 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	TSR1	Q07381	788 aa	Known RBP	4.07	□□□□□ -1.76
SOF1	YLL011W	BTS1	Q12051	335 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	SLM3	Q12093	417 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	ATG34	Q12292	412 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	YPR1	Q12458	312 aa		4.07	□□□□□ -1.76
SOF1	YLL011W	RRP12	Q12754	1228 aa	Known RBP	4.07	□□□□□ -1.76
SOF1	YLL011W	HIS4	P00815	799 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	ARG4	P04076	463 aa	Predicted RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	CDC36	P06100	191 aa	Predicted RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	CLN3	P13365	580 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	KIN3	P22209	435 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	UTR4	P32626	227 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	THI80	P35202	319 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	YKR015C	P36111	568 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	PHO90	P39535	881 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms