RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	AGP1	P25376	633 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	NGG1	P32494	702 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	PRP21	P32524	280 aa	Predicted RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	SAC6	P32599	642 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	YBR139W	P38109	508 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YHL008C	P38750	627 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	GDH3	P39708	457 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	ORC5	P50874	479 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YNL140C	P53910	189 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YDR132C	Q03900	495 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	GPI17	Q04080	534 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	BCH1	Q05029	724 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	ADY4	Q05955	493 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YLR179C	Q06252	201 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	YLR036C	Q07986	203 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RCL1	Q08096	367 aa	Predicted RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	YOL075C	Q08234	1294 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YNG1	Q08465	219 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	FSH3	Q99369	266 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	HTB1	P02293	131 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	HTB2	P02294	131 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	LEU2	P04173	364 aa	Predicted RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	SPE1	P08432	466 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RPS18A	P0CX55	146 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	RPS18B	P0CX56	146 aa	Predicted RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	PET54	P10834	293 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	VPS34	P22543	875 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	PBN1	P25580	416 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	TAF14	P35189	244 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	JEN1	P36035	616 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	DTR1	P38125	572 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	ERG28	P40030	148 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RPE1	P46969	238 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	ART5	P53244	586 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	ATG4	P53867	494 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YDR541C	Q03049	344 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YDR109C	Q04585	715 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	CYK3	Q07533	885 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	FMP45	Q07651	309 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	SLM3	Q12093	417 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YOR214C	Q12282	236 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YDR061W	Q12298	539 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	VPS63	O13549	108 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	SPT3	P06844	337 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RPL1A	P0CX43	217 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	RPL1B	P0CX44	217 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	SEC12	P11655	471 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YCL049C	P25577	312 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	DGR2	P32330	852 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RGT1	P32862	1170 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	IMP3	P32899	183 aa	Predicted RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	UTP30	P36144	274 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	SHE3	P38272	425 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	PCA1	P38360	1216 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	VRG4	P40107	337 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RFC4	P40339	323 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	PRM10	P42946	383 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	MIC19	P43594	170 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RTT101	P47050	842 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	SAM37	P50110	327 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RTT102	P53330	157 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	COS6	P53344	381 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	NOG2	P53742	486 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	VPS75	P53853	264 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	YDR391C	Q04170	232 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	BLS1	Q06071	122 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	ATG23	Q06671	453 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	FMP25	Q08023	583 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	CRT10	Q08226	957 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	RRP40	Q08285	240 aa	Known RBP	3.28	□□□□□ -1.88
PEX1	YKL197C	YOR365C	Q08844	703 aa		3.28	□□□□□ -1.88
PEX1	YKL197C	TDH2	P00358	332 aa	Known RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.27	□□□□□ -1.89	not detected
PEX1	YKL197C	ASP3-2	P0CX77	362 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	ASP3-3	P0CX78	362 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	ASP3-4	P0CX79	362 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	ASP3-1	P0CZ17	362 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	EST1	P17214	699 aa	Predicted RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	MET16	P18408	261 aa	Predicted RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	PHO13	P19881	312 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	KKQ8	P36004	724 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	YBR284W	P38150	797 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	GPB2	P39717	880 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	YER130C	P39959	443 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	HSV2	P50079	448 aa	Predicted RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	YNR066C	P53752	436 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	TIM44	Q01852	431 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	DYN2	Q02647	92 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	YPL077C	Q02831	240 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	PRM15	Q03262	622 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	NSL1	Q12143	216 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	PRM4	Q12498	284 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	YLR361C-A	Q3E795	98 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	ATP2	P00830	511 aa	Known RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	RPL24A	P04449	155 aa	Known RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	ATP12	P22135	325 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	VBA3	P25594	458 aa		3.27	□□□□□ -1.89
PEX1	YKL197C	SBA1	P28707	216 aa	Known RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	MCM5	P29496	775 aa	Known RBP	3.27	□□□□□ -1.89
PEX1	YKL197C	ARO7	P32178	256 aa		3.27	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 24.1 ms