RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W OM45P16547 393 aa5.14□□□□□ -1.59
PRP40YKL012W PUT3P25502 979 aaPredicted RBP5.14□□□□□ -1.59
PRP40YKL012W ATS1P31386 333 aa5.14□□□□□ -1.59
PRP40YKL012W TIF5P38431 405 aaKnown RBP5.14□□□□□ -1.59
PRP40YKL012W ALP1P38971 573 aa5.14□□□□□ -1.59
PRP40YKL012W SFH5P47008 294 aa5.14□□□□□ -1.59
PRP40YKL012W YGL114WP53134 725 aa5.14□□□□□ -1.59
PRP40YKL012W YGR117CP53270 476 aa5.14□□□□□ -1.59
PRP40YKL012W ARR1Q06596 294 aa5.14□□□□□ -1.59
PRP40YKL012W BPT1P14772 1559 aa5.13□□□□□ -1.59
PRP40YKL012W MAS2P11914 482 aa5.13□□□□□ -1.59
PRP40YKL012W SLY1P22213 666 aa5.13□□□□□ -1.59
PRP40YKL012W AIM20P40451 204 aa5.13□□□□□ -1.59
PRP40YKL012W LYS12P40495 371 aaKnown RBP5.13□□□□□ -1.59
PRP40YKL012W RRN9P53437 365 aa5.13□□□□□ -1.59
PRP40YKL012W YNL146WP53906 100 aa5.13□□□□□ -1.59
PRP40YKL012W YPL068CQ02749 293 aa5.13□□□□□ -1.59
PRP40YKL012W AIM33Q04516 312 aa5.13□□□□□ -1.59
PRP40YKL012W BCH1Q05029 724 aa5.13□□□□□ -1.59
PRP40YKL012W YLR297WQ05899 129 aa5.13□□□□□ -1.59
PRP40YKL012W GLE1Q12315 538 aa5.13□□□□□ -1.59
PRP40YKL012W RNA14P25298 677 aaKnown RBP5.12□□□□□ -1.59
PRP40YKL012W EFB1P32471 206 aaKnown RBP5.12□□□□□ -1.59
PRP40YKL012W RIB5P38145 238 aa5.12□□□□□ -1.59
PRP40YKL012W LOC1P43586 204 aaPredicted RBP5.12□□□□□ -1.59
PRP40YKL012W SPR6Q01684 191 aa5.12□□□□□ -1.59
PRP40YKL012W EGD1Q02642 157 aaKnown RBP5.12□□□□□ -1.59
PRP40YKL012W RAX1Q08760 435 aa5.12□□□□□ -1.59
PRP40YKL012W YOP1Q12402 180 aa5.12□□□□□ -1.59
PRP40YKL012W RRP12Q12754 1228 aaKnown RBP5.12□□□□□ -1.59
PRP40YKL012W YIL002W-AQ3E7Z5 69 aa5.12□□□□□ -1.59
PRP40YKL012W RPS16AP0CX51 143 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W RPS16BP0CX52 143 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W YCL068CP25593 260 aa5.11□□□□□ -1.59
PRP40YKL012W YEF1P32622 495 aa5.11□□□□□ -1.59
PRP40YKL012W MIX23P38162 196 aa5.11□□□□□ -1.59
PRP40YKL012W PRP39P39682 629 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W LAP3Q01532 483 aaKnown RBP RIP-Chip data5.11□□□□□ -1.59not detected
PRP40YKL012W SET6Q12529 373 aa5.11□□□□□ -1.59
PRP40YKL012W ECM5Q03214 1411 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-LR1P0C2J3 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-FP0CX63 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-GR2P0CX64 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-CP25384 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-DR2Q03494 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY1B-DR1Q03855 1755 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-DR3Q07791 1770 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W TY2B-OR1Q12113 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-DR1Q12472 1770 aa5.11□□□□□ -1.59
PRP40YKL012W TY2B-OR2Q12501 1770 aa5.11□□□□□ -1.59
PRP40YKL012W CLN3P13365 580 aa5.11□□□□□ -1.59
PRP40YKL012W RPH1P39956 796 aa5.11□□□□□ -1.59
PRP40YKL012W YFR016CP43597 1233 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W YHC3P47040 408 aa5.11□□□□□ -1.59
PRP40YKL012W IBD2P53892 351 aa5.11□□□□□ -1.59
PRP40YKL012W CCE1Q03702 353 aa5.11□□□□□ -1.59
PRP40YKL012W SNX3Q08826 162 aaKnown RBP5.11□□□□□ -1.59
PRP40YKL012W DAP1Q12091 152 aa5.11□□□□□ -1.59
PRP40YKL012W PAB1P04147 577 aaKnown RBP RIP-Chip data5.1□□□□□ -1.59not detected
PRP40YKL012W SPS22P25380 463 aa5.1□□□□□ -1.59
PRP40YKL012W END3P39013 349 aa5.1□□□□□ -1.59
PRP40YKL012W SAD1P43589 448 aa5.1□□□□□ -1.59
PRP40YKL012W TY1B-DR3Q99231 1755 aa5.1□□□□□ -1.59
PRP40YKL012W SCC2Q04002 1493 aa5.1□□□□□ -1.59
PRP40YKL012W POM152P39685 1337 aa5.09□□□□□ -1.59
PRP40YKL012W RKR1Q04781 1562 aa5.09□□□□□ -1.59
PRP40YKL012W CAP2P13517 287 aa5.09□□□□□ -1.59
PRP40YKL012W PUT4P15380 627 aa5.09□□□□□ -1.59
PRP40YKL012W CKI1P20485 582 aa5.09□□□□□ -1.59
PRP40YKL012W EXG1P23776 448 aaKnown RBP5.09□□□□□ -1.59
PRP40YKL012W MCR1P36060 302 aaKnown RBP5.09□□□□□ -1.59
PRP40YKL012W CHK1P38147 527 aa5.09□□□□□ -1.59
PRP40YKL012W YBR137WP38276 179 aa5.09□□□□□ -1.59
PRP40YKL012W OST1P41543 476 aaKnown RBP5.09□□□□□ -1.59
PRP40YKL012W HXT11P54862 567 aa5.09□□□□□ -1.59
PRP40YKL012W YDR262WQ12331 272 aa5.09□□□□□ -1.59
PRP40YKL012W SPO24Q3E752 67 aa5.09□□□□□ -1.59
PRP40YKL012W YOR338WQ99326 363 aa5.09□□□□□ -1.59
PRP40YKL012W GAL7P08431 366 aa5.09□□□□□ -1.6
PRP40YKL012W SSC1P0CS90 654 aaKnown RBP5.09□□□□□ -1.6
PRP40YKL012W MRPL8P22353 238 aa5.09□□□□□ -1.6
PRP40YKL012W VAM7P32912 316 aa5.09□□□□□ -1.6
PRP40YKL012W NAT2P37293 288 aa5.09□□□□□ -1.6
PRP40YKL012W SWC5P38326 303 aa5.09□□□□□ -1.6
PRP40YKL012W JLP2P40206 208 aa5.09□□□□□ -1.6
PRP40YKL012W YMR134WP40207 237 aa5.09□□□□□ -1.6
PRP40YKL012W COS10P52924 374 aa5.09□□□□□ -1.6
PRP40YKL012W CAB5Q03941 241 aa5.09□□□□□ -1.6
PRP40YKL012W YLR413WQ06689 675 aa5.09□□□□□ -1.6
PRP40YKL012W MDS3P53094 1487 aa5.08□□□□□ -1.6
PRP40YKL012W YLL053CP0CD98 152 aa5.08□□□□□ -1.6
PRP40YKL012W YBP1P38315 674 aa5.08□□□□□ -1.6
PRP40YKL012W YDL186WP48568 277 aa5.08□□□□□ -1.6
PRP40YKL012W RPN14P53196 417 aa5.08□□□□□ -1.6
PRP40YKL012W SMP3Q04174 516 aa5.08□□□□□ -1.6
PRP40YKL012W VPS45P38932 577 aa5.07□□□□□ -1.6
PRP40YKL012W COS1P53822 381 aa5.07□□□□□ -1.6
PRP40YKL012W GOR1P53839 350 aa5.07□□□□□ -1.6
PRP40YKL012W THP3Q12049 470 aaKnown RBP5.07□□□□□ -1.6
PRP40YKL012W RGT2Q12300 763 aa5.07□□□□□ -1.6
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms