RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C PUP2P32379 260 aa2.03□□□□□ -2.08
UFD4YKL010C SPC34P36131 295 aa2.03□□□□□ -2.08
UFD4YKL010C YKR073CP36153 106 aa2.03□□□□□ -2.08
UFD4YKL010C YHR177WP38867 453 aa2.03□□□□□ -2.08
UFD4YKL010C PTH1P38876 190 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C DHH1P39517 506 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C SPF1P39986 1215 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C GIP2P40036 548 aa2.03□□□□□ -2.08
UFD4YKL010C DOT6P40059 670 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C PSF2P40359 213 aa2.03□□□□□ -2.08
UFD4YKL010C YJL068CP40363 299 aa2.03□□□□□ -2.08
UFD4YKL010C AGX1P43567 385 aa2.03□□□□□ -2.08
UFD4YKL010C RET2P43621 546 aa2.03□□□□□ -2.08
UFD4YKL010C JHD2P47156 728 aaPredicted RBP2.03□□□□□ -2.08
UFD4YKL010C SWC4P53201 476 aa2.03□□□□□ -2.08
UFD4YKL010C SNF12P53628 566 aa2.03□□□□□ -2.08
UFD4YKL010C YPL071CQ02864 156 aa2.03□□□□□ -2.08
UFD4YKL010C YMR087WQ04299 284 aa2.03□□□□□ -2.08
UFD4YKL010C PLM2Q04383 521 aa2.03□□□□□ -2.08
UFD4YKL010C TMN2Q04562 672 aa2.03□□□□□ -2.08
UFD4YKL010C ELP6Q04868 273 aa2.03□□□□□ -2.08
UFD4YKL010C RNH202Q05635 350 aa2.03□□□□□ -2.08
UFD4YKL010C YLR283WQ05867 314 aa2.03□□□□□ -2.08
UFD4YKL010C PLB3Q08108 686 aa2.03□□□□□ -2.08
UFD4YKL010C VPS68Q12016 184 aa2.03□□□□□ -2.08
UFD4YKL010C YDL211CQ12121 372 aa2.03□□□□□ -2.08
UFD4YKL010C ARG81P05085 880 aa2.03□□□□□ -2.08
UFD4YKL010C CAR2P07991 424 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C SPS1P08458 490 aa2.03□□□□□ -2.08
UFD4YKL010C RPS21AP0C0V8 87 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C PET54P10834 293 aa2.03□□□□□ -2.08
UFD4YKL010C PUP1P25043 261 aa2.03□□□□□ -2.08
UFD4YKL010C CDC13P32797 924 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C GCS1P35197 352 aa2.03□□□□□ -2.08
UFD4YKL010C DHR2P36009 735 aaPredicted RBP2.03□□□□□ -2.08
UFD4YKL010C OMA1P36163 345 aa2.03□□□□□ -2.08
UFD4YKL010C YBR056WP38081 501 aa2.03□□□□□ -2.08
UFD4YKL010C NEM1P38757 446 aa2.03□□□□□ -2.08
UFD4YKL010C ATG7P38862 630 aa2.03□□□□□ -2.08
UFD4YKL010C PAN6P40459 309 aa2.03□□□□□ -2.08
UFD4YKL010C YKE4P40544 346 aa2.03□□□□□ -2.08
UFD4YKL010C CAK1P43568 368 aaPredicted RBP2.03□□□□□ -2.08
UFD4YKL010C TIM13P53299 105 aa2.03□□□□□ -2.08
UFD4YKL010C AAT1Q01802 451 aa2.03□□□□□ -2.08
UFD4YKL010C CTK1Q03957 528 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C CRN1Q06440 651 aa2.03□□□□□ -2.08
UFD4YKL010C YOL107WQ12239 342 aa2.03□□□□□ -2.08
UFD4YKL010C YOR214CQ12282 236 aa2.03□□□□□ -2.08
UFD4YKL010C RPC40P07703 335 aaKnown RBP2.03□□□□□ -2.09
UFD4YKL010C MSN1P22148 382 aa2.03□□□□□ -2.09
UFD4YKL010C KRE6P32486 720 aa2.03□□□□□ -2.09
UFD4YKL010C RPF2P36160 344 aaKnown RBP2.03□□□□□ -2.09
UFD4YKL010C MUM2P38236 366 aa2.03□□□□□ -2.09
UFD4YKL010C YBR137WP38276 179 aa2.03□□□□□ -2.09
UFD4YKL010C YIL067CP40514 678 aa2.03□□□□□ -2.09
UFD4YKL010C QRI7P43122 407 aa2.03□□□□□ -2.09
UFD4YKL010C UPF3P48412 387 aaKnown RBP2.03□□□□□ -2.09
UFD4YKL010C MAL11P53048 616 aa2.03□□□□□ -2.09
UFD4YKL010C FRE4P53746 719 aa2.03□□□□□ -2.09
UFD4YKL010C PLB2Q03674 706 aa2.03□□□□□ -2.09
UFD4YKL010C COS7Q07788 383 aa2.03□□□□□ -2.09
UFD4YKL010C YEH1Q07804 573 aa2.03□□□□□ -2.09
UFD4YKL010C MED7Q08278 222 aa2.03□□□□□ -2.09
UFD4YKL010C UIP4Q08926 304 aa2.03□□□□□ -2.09
UFD4YKL010C TGS1Q12052 315 aa2.03□□□□□ -2.09
UFD4YKL010C ATG29Q12092 213 aa2.03□□□□□ -2.09
UFD4YKL010C SUL2Q12325 893 aa2.03□□□□□ -2.09
UFD4YKL010C CDC21P06785 304 aa2.02□□□□□ -2.09
UFD4YKL010C KAR1P11927 433 aa2.02□□□□□ -2.09
UFD4YKL010C ART10P18634 518 aaKnown RBP2.02□□□□□ -2.09
UFD4YKL010C UBC8P28263 218 aa2.02□□□□□ -2.09
UFD4YKL010C MKK1P32490 508 aa2.02□□□□□ -2.09
UFD4YKL010C PIM1P36775 1133 aa2.02□□□□□ -2.09
UFD4YKL010C SRO77P38163 1010 aa2.02□□□□□ -2.09
UFD4YKL010C APE4P38821 490 aa2.02□□□□□ -2.09
UFD4YKL010C COG3P40094 801 aa2.02□□□□□ -2.09
UFD4YKL010C HIS6P40545 261 aa2.02□□□□□ -2.09
UFD4YKL010C PMT6P42934 759 aa2.02□□□□□ -2.09
UFD4YKL010C APS3P47064 194 aa2.02□□□□□ -2.09
UFD4YKL010C VEL1P53058 206 aa2.02□□□□□ -2.09
UFD4YKL010C RNH70P53331 553 aa2.02□□□□□ -2.09
UFD4YKL010C YNR065CP53751 1116 aa2.02□□□□□ -2.09
UFD4YKL010C YMD8Q03697 442 aa2.02□□□□□ -2.09
UFD4YKL010C TAF12Q03761 539 aa2.02□□□□□ -2.09
UFD4YKL010C BOP2Q06150 570 aa2.02□□□□□ -2.09
UFD4YKL010C YLR173WQ06247 608 aa2.02□□□□□ -2.09
UFD4YKL010C TPO3Q06451 622 aa2.02□□□□□ -2.09
UFD4YKL010C DIN7Q12086 430 aa2.02□□□□□ -2.09
UFD4YKL010C MET17P06106 444 aa2.02□□□□□ -2.09
UFD4YKL010C SIR3P06701 978 aa2.02□□□□□ -2.09
UFD4YKL010C PHO4P07270 312 aaKnown RBP2.02□□□□□ -2.09
UFD4YKL010C CAP2P13517 287 aa2.02□□□□□ -2.09
UFD4YKL010C IDP1P21954 428 aaKnown RBP2.02□□□□□ -2.09
UFD4YKL010C CDC5P32562 705 aa2.02□□□□□ -2.09
UFD4YKL010C PUB1P32588 453 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09not detected
UFD4YKL010C SEC17P32602 292 aa2.02□□□□□ -2.09
UFD4YKL010C ANR2P36090 516 aaPredicted RBP2.02□□□□□ -2.09
UFD4YKL010C GMH1P36125 273 aa2.02□□□□□ -2.09
UFD4YKL010C KAE1P36132 386 aa2.02□□□□□ -2.09
UFD4YKL010C UTP30P36144 274 aaKnown RBP2.02□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms