RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YJR154W	P47181	346 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	AZR1	P50080	613 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	BIO4	P53630	237 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	BET4	Q00618	327 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	STP1	Q00947	519 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	POS5	Q06892	414 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	SSK1	Q07084	712 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	CUE5	Q08412	411 aa	Known RBP	3.7	□□□□□ -1.82
UBX5	YDR330W	YOR365C	Q08844	703 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	AEP3	Q12089	606 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	VAM3	Q12241	283 aa		3.7	□□□□□ -1.82
UBX5	YDR330W	GPA2	P10823	449 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	RNA1	P11745	407 aa	Known RBP	3.69	□□□□□ -1.82
UBX5	YDR330W	TYR1	P20049	452 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	REC114	P32841	428 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	CSE2	P33308	149 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	COY1	P34237	679 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	CBP4	P37267	147 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	TVP23	P38962	199 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	ALT2	P52892	507 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	PEX31	P53203	462 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	YNL234W	P53857	426 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	ERG13	P54839	491 aa	Known RBP	3.69	□□□□□ -1.82
UBX5	YDR330W	YPL107W	Q02873	248 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	APC5	Q08683	685 aa		3.69	□□□□□ -1.82
UBX5	YDR330W	GAL4	P04386	881 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	RAD52	P06778	471 aa	Known RBP	3.68	□□□□□ -1.82
UBX5	YDR330W	RAD3	P06839	778 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	GID7	P25569	745 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	RPC19	P28000	142 aa	Known RBP	3.68	□□□□□ -1.82
UBX5	YDR330W	URA10	P30402	227 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	RFC3	P38629	340 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	PEP8	P40335	379 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	POP1	P41812	875 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	YFL012W	P43580	148 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	YJL132W	P47014	750 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	ILM1	P47155	203 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	PKP2	P53170	491 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	COP1	P53622	1201 aa	Known RBP	3.68	□□□□□ -1.82
UBX5	YDR330W	KTR6	P54070	446 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	RSC9	Q03124	581 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	DCS1	Q06151	350 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	NRT1	Q08485	598 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	UAF30	Q08747	228 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	NFI1	Q12216	726 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	FRE7	Q12333	620 aa		3.68	□□□□□ -1.82
UBX5	YDR330W	UBR2	Q07963	1872 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	RPL1A	P0CX43	217 aa	Known RBP	3.67	□□□□□ -1.82
UBX5	YDR330W	RPL1B	P0CX44	217 aa	Known RBP	3.67	□□□□□ -1.82
UBX5	YDR330W	EXO70	P19658	623 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	SGV1	P23293	657 aa	Known RBP	3.67	□□□□□ -1.82
UBX5	YDR330W	HIR2	P32480	875 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	TKL2	P33315	681 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	MSN2	P33748	704 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	DAD2	P36162	133 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	FLO10	P36170	1169 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	RIM2	P38127	377 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	FZO1	P38297	855 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	PRM9	P39551	298 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	YAT2	P40017	923 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	CFD1	P40558	293 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	BUD32	P53323	261 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	RCF2	P53721	224 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	RHO4	Q00246	291 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	YPL014W	Q02606	381 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	SMA1	Q02651	245 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	FMN1	Q03778	218 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.67	□□□□□ -1.82	not detected
UBX5	YDR330W	DDC1	Q08949	612 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	GPM2	Q12008	311 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	NOT5	Q12514	560 aa	Predicted RBP	3.67	□□□□□ -1.82
UBX5	YDR330W	EFG1	Q3E705	233 aa	Known RBP	3.67	□□□□□ -1.82
UBX5	YDR330W	MTR10	Q99189	972 aa		3.67	□□□□□ -1.82
UBX5	YDR330W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.66	□□□□□ -1.82	not detected
UBX5	YDR330W	RPL6B	P05739	176 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	HAP2	P06774	265 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	RIP1	P08067	215 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	ATP10	P18496	279 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	SSE1	P32589	693 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	SCO2	P38072	301 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	WSS1	P38838	269 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	STN1	P38960	494 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	POP2	P39008	433 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	SER3	P40054	469 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	ATM1	P40416	690 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	RPS0B	P46654	252 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	RPL6A	Q02326	176 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	LGE1	Q02796	332 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	RNY1	Q02933	434 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	AAD15	Q08361	143 aa		3.66	□□□□□ -1.82
UBX5	YDR330W	PKH2	Q12236	1081 aa	Known RBP	3.66	□□□□□ -1.82
UBX5	YDR330W	YPR089W	O13585	888 aa		3.65	□□□□□ -1.82
UBX5	YDR330W	SEC14	P24280	304 aa	Known RBP	3.65	□□□□□ -1.82
UBX5	YDR330W	PHO84	P25297	587 aa	Known RBP	3.65	□□□□□ -1.82
UBX5	YDR330W	YCL068C	P25593	260 aa		3.65	□□□□□ -1.82
UBX5	YDR330W	BEM1	P29366	551 aa		3.65	□□□□□ -1.82
UBX5	YDR330W	RIM1	P32445	135 aa	Known RBP	3.65	□□□□□ -1.82
UBX5	YDR330W	SMI1	P32566	505 aa		3.65	□□□□□ -1.82
UBX5	YDR330W	CYM1	P32898	989 aa		3.65	□□□□□ -1.82
UBX5	YDR330W	PHO89	P38361	574 aa		3.65	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 29.3 ms