RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 UBA5Q9GZZ9 404 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 EPN3Q9H201 632 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 PCDHAC2Q9Y5I4 1007 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
VPS4B-206ENST00000591475 KCNA4P22459 653 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 LSP1P33241 339 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 MARSP56192 900 aaKnown RBP11.88□□□□□ -0.51
VPS4B-206ENST00000591475 KLHL30Q0D2K2 578 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 GPR162Q16538 588 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 TRIM59Q8IWR1 403 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 GPC2Q8N158 579 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 USP38Q8NB14 1042 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 ATP6V1G3Q96LB4 118 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 AIPL1Q9NZN9 384 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 GJA3Q9Y6H8 435 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 FOCADQ5VW36 1801 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 KDM3AQ9Y4C1 1321 aa11.88□□□□□ -0.51
VPS4B-206ENST00000591475 A0A087X0T9 212 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 BTNL10A8MVZ5 291 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 EDIL3O43854 480 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 GRIN3BO60391 1043 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 FAM228BP0C875 321 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 USP8P40818 1118 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 EPS15P42566 896 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 NOVP48745 357 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 ZNF280AP59817 542 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 ASPRV1Q53RT3 343 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 C10orf76Q5T2E6 689 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PPP4R3AQ6IN85 833 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PPP1R18Q6NYC8 613 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 CCDC65Q8IXS2 484 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 OTUD6BQ8N6M0 293 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 EIF1ADQ8N9N8 165 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 KAT2BQ92831 832 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 COA7Q96BR5 231 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PAGR1Q9BTK6 254 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 DHX36Q9H2U1 1008 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 TAF1DQ9H5J8 278 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 TDRD3Q9H7E2 651 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 YY1AP1Q9H869 796 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MYOZ2Q9NPC6 264 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 DDX4Q9NQI0 724 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 TMOD2Q9NZR1 351 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 FRMPD2Q68DX3 1309 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 GOLGA6L10A6NI86 522 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 SRRM3A6NNA2 597 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MEFVO15553 781 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 RAD51CO43502 376 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MARCH6O60337 910 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PPP1R37O75864 691 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MYBP10242 640 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PDHBP11177 359 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 HSPA9P38646 679 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 TNNI2P48788 182 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 GMPSP49915 693 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 ARID5AQ03989 594 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 NFIAQ12857 509 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 RPS6KA1Q15418 735 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 ECM1Q16610 540 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PTGISQ16647 500 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 IFI16Q16666 785 aaKnown RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MCTP2Q6DN12 878 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 MAATS1Q7Z4T9 603 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PLCD3Q8N3E9 789 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 FAM133AQ8N9E0 248 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 NT5C3AQ9H0P0 336 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 RNF181Q9P0P0 153 aa11.87□□□□□ -0.51
VPS4B-206ENST00000591475 PACSIN2Q9UNF0 486 aaPredicted RBP11.87□□□□□ -0.51
VPS4B-206ENST00000591475 ZNF541Q9H0D2 1346 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ENTPD3O75355 529 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 SSBP05455 408 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 MDH1P40925 334 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 GUCY1A3Q02108 690 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CUL1Q13616 776 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 NAA35Q5VZE5 725 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 LRIG3Q6UXM1 1119 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CNPY4Q8N129 248 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ZNF473Q8WTR7 871 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 PBKQ96KB5 322 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CEP89Q96ST8 783 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ISCUQ9H1K1 167 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 GANQ9H2C0 597 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 PLCB1Q9NQ66 1216 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ADAMTS1Q9UHI8 967 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 DDX25Q9UHL0 483 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CNOT7Q9UIV1 285 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 TMEM59LQ9UK28 342 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 PLAAQ9Y263 795 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 WNT10BO00744 389 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 KCNK3O14649 394 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 HNRNPH1P31943 449 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CACNB3P54284 484 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 RNASE9P60153 205 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 HLTFQ14527 1009 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 HYIQ5T013 277 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 SWT1Q5T5J6 900 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 FKBP1CQ5VVH2 108 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms