RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 C16orf86Q6ZW13 317 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 SIRT2Q8IXJ6 389 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 TDHQ8IZJ6 230 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 NEDD1Q8NHV4 660 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 MOV10L1Q9BXT6 1211 aaKnown RBP11.03□□□□□ -0.64
CIITA-208ENST00000572665 SOX17Q9H6I2 414 aaPredicted RBP11.03□□□□□ -0.64
CIITA-208ENST00000572665 ECHDC1Q9NTX5 307 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 KBTBD4Q9NVX7 518 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 PCDHGB7Q9Y5F8 929 aa11.03□□□□□ -0.64
CIITA-208ENST00000572665 ZNFX1Q9P2E3 1918 aaKnown RBP11.02□□□□□ -0.65
CIITA-208ENST00000572665 ARHGEF15O94989 841 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 AKR1B1P15121 316 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 SYN1P17600 705 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 GNAT2P19087 354 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 MAGEA10P43363 369 aaPredicted RBP11.02□□□□□ -0.65
CIITA-208ENST00000572665 LRIT3Q3SXY7 679 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 HGSNATQ68CP4 663 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 FAM117BQ6P1L5 589 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 SLC44A5Q8NCS7 719 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 WNT8BQ93098 351 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 DYNLL2Q96FJ2 89 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 SENP6Q9GZR1 1112 aaPredicted RBP11.02□□□□□ -0.65
CIITA-208ENST00000572665 MKNK2Q9HBH9 465 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 SRA1Q9HD15 236 aaKnown RBP11.02□□□□□ -0.65
CIITA-208ENST00000572665 NRBP1Q9UHY1 535 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 PFASO15067 1338 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 PARP14Q460N5 1801 aa11.02□□□□□ -0.65
CIITA-208ENST00000572665 RLFQ13129 1914 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 SEPT4O43236 478 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 PRKAB2O43741 272 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 CYP2D6P10635 497 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 CYBAP13498 195 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 EEF2P13639 858 aaKnown RBP11.01□□□□□ -0.65
CIITA-208ENST00000572665 CYP2C19P33261 490 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 LIG3P49916 1009 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 RACK1P63244 317 aaKnown RBP11.01□□□□□ -0.65
CIITA-208ENST00000572665 PWP1Q13610 501 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 KCTD2Q14681 263 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 SBK1Q52WX2 424 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 DMRTC2Q8IXT2 367 aaPredicted RBP11.01□□□□□ -0.65
CIITA-208ENST00000572665 SPICE1Q8N0Z3 855 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 NPLOC4Q8TAT6 608 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 FLRT1Q9NZU1 646 aa11.01□□□□□ -0.65
CIITA-208ENST00000572665 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.01□□□□□ -0.65
CIITA-208ENST00000572665 CTDP1Q9Y5B0 961 aaPredicted RBP11.01□□□□□ -0.65
CIITA-208ENST00000572665 COL11A1P12107 1806 aaPredicted RBP11□□□□□ -0.65
CIITA-208ENST00000572665 PLXNA1Q9UIW2 1896 aa11□□□□□ -0.65
CIITA-208ENST00000572665 FSCN2O14926 492 aa11□□□□□ -0.65
CIITA-208ENST00000572665 ERC2O15083 957 aa11□□□□□ -0.65
CIITA-208ENST00000572665 SLC3A2P08195 630 aaKnown RBP11□□□□□ -0.65
CIITA-208ENST00000572665 LRRC26Q2I0M4 334 aa11□□□□□ -0.65
CIITA-208ENST00000572665 PCNX4Q63HM2 1172 aa11□□□□□ -0.65
CIITA-208ENST00000572665 CTR9Q6PD62 1173 aa11□□□□□ -0.65
CIITA-208ENST00000572665 RIOX2Q8IUF8 465 aa11□□□□□ -0.65
CIITA-208ENST00000572665 RELL1Q8IUW5 271 aa11□□□□□ -0.65
CIITA-208ENST00000572665 ZNF654Q8IZM8 581 aa11□□□□□ -0.65
CIITA-208ENST00000572665 ZNF444Q8N0Y2 327 aaPredicted RBP11□□□□□ -0.65
CIITA-208ENST00000572665 KBTBD3Q8NAB2 608 aa11□□□□□ -0.65
CIITA-208ENST00000572665 PHC3Q8NDX5 983 aa11□□□□□ -0.65
CIITA-208ENST00000572665 SLC7A3Q8WY07 619 aa11□□□□□ -0.65
CIITA-208ENST00000572665 APPBP2Q92624 585 aa11□□□□□ -0.65
CIITA-208ENST00000572665 ATG4CQ96DT6 458 aa11□□□□□ -0.65
CIITA-208ENST00000572665 TMEM74Q96NL1 305 aa11□□□□□ -0.65
CIITA-208ENST00000572665 MMP19Q99542 508 aa11□□□□□ -0.65
CIITA-208ENST00000572665 NACAP1Q9BZK3 213 aa11□□□□□ -0.65
CIITA-208ENST00000572665 CCSER2Q9H7U1 834 aa11□□□□□ -0.65
CIITA-208ENST00000572665 DIS3Q9Y2L1 958 aaKnown RBP11□□□□□ -0.65
CIITA-208ENST00000572665 RARBP10826 455 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 NME2P22392 152 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 TDO2P48775 406 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 C19orf57Q0VDD7 668 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 SETDB1Q15047 1291 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 TTBK2Q6IQ55 1244 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 MSL3Q8N5Y2 521 aaKnown RBP10.99□□□□□ -0.65
CIITA-208ENST00000572665 MAML3Q96JK9 1138 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 STRBPQ96SI9 672 aaKnown RBP10.99□□□□□ -0.65
CIITA-208ENST00000572665 PUS7LQ9H0K6 701 aaKnown RBP10.99□□□□□ -0.65
CIITA-208ENST00000572665 DCTPP1Q9H773 170 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 OSGEPQ9NPF4 335 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 PPP1R9AQ9ULJ8 1098 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 SYNPO2Q9UMS6 1093 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 ADAMTS5Q9UNA0 930 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 MYH4Q9Y623 1939 aa10.99□□□□□ -0.65
CIITA-208ENST00000572665 CYP2D7A0A087X1C5 515 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 MINDY4BA8MYZ0 360 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 RNF113AO15541 343 aaKnown RBP10.98□□□□□ -0.65
CIITA-208ENST00000572665 APPP05067 770 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 BMP6P22004 513 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 GBP2P32456 591 aaPredicted RBP10.98□□□□□ -0.65
CIITA-208ENST00000572665 STAT3P40763 770 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 ARL4DP49703 201 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 GSTM4Q03013 218 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 PDE4BQ07343 736 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 TMEM132BQ14DG7 1078 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 RNF180Q86T96 592 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 SIAH1Q8IUQ4 282 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 SULF2Q8IWU5 870 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 PRPF38AQ8NAV1 312 aaKnown RBP10.98□□□□□ -0.65
CIITA-208ENST00000572665 SLF1Q9BQI6 1058 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 ACBD3Q9H3P7 528 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms