RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 AEBP2Q6ZN18 517 aaPredicted RBP31.88■■■□□ 2.69
CIITA-208ENST00000572665 CHIC1Q5VXU3 224 aa31.61■■■□□ 2.65
CIITA-208ENST00000572665 PHF23Q9BUL5 403 aaPredicted RBP27.85■■■□□ 2.05
CIITA-208ENST00000572665 SENP3Q9H4L4 574 aaPredicted RBP26.95■■□□□ 1.9
CIITA-208ENST00000572665 PLPPR3Q6T4P5 718 aa25.87■■□□□ 1.73
CIITA-208ENST00000572665 FOXD1Q16676 465 aa24.96■■□□□ 1.59
CIITA-208ENST00000572665 ADRA2BP18089 450 aa24.41■■□□□ 1.5
CIITA-208ENST00000572665 PPP6R1Q9UPN7 881 aa24.41■■□□□ 1.5
CIITA-208ENST00000572665 PIAS4Q8N2W9 510 aaPredicted RBP23.65■■□□□ 1.38
CIITA-208ENST00000572665 KCNA4P22459 653 aa22.9■■□□□ 1.26
CIITA-208ENST00000572665 NISCHQ9Y2I1 1504 aa22.87■■□□□ 1.25
CIITA-208ENST00000572665 PPP4R3CPQ6ZMV5 832 aa22.86■■□□□ 1.25
CIITA-208ENST00000572665 MSH5O43196 834 aa22.81■■□□□ 1.24
CIITA-208ENST00000572665 NCBP3Q53F19 620 aaKnown RBP22.39■■□□□ 1.17
CIITA-208ENST00000572665 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
CIITA-208ENST00000572665 CNKSR2Q8WXI2 1034 aa22.11■■□□□ 1.13
CIITA-208ENST00000572665 NPM3O75607 178 aaKnown RBP22.08■■□□□ 1.13
CIITA-208ENST00000572665 MAPK8IP2Q13387 824 aaPredicted RBP22■■□□□ 1.11
CIITA-208ENST00000572665 SLC4A1APQ9BWU0 796 aaKnown RBP21.89■■□□□ 1.09
CIITA-208ENST00000572665 EHMT2Q96KQ7 1210 aa21.82■■□□□ 1.08
CIITA-208ENST00000572665 DMRT2Q9Y5R5 561 aa21.6■■□□□ 1.05
CIITA-208ENST00000572665 RNF216Q9NWF9 866 aaPredicted RBP21.57■■□□□ 1.04
CIITA-208ENST00000572665 DNAJC5BQ9UF47 199 aa21.4■■□□□ 1.02
CIITA-208ENST00000572665 CSRNP3Q8WYN3 585 aa21.37■■□□□ 1.01
CIITA-208ENST00000572665 HOXD11P31277 338 aaPredicted RBP21.36■■□□□ 1.01
CIITA-208ENST00000572665 ZBTB22O15209 634 aa21.1■□□□□ 0.97
CIITA-208ENST00000572665 FOXD4L1Q9NU39 408 aa20.93■□□□□ 0.94
CIITA-208ENST00000572665 SLC4A2P04920 1241 aa20.74■□□□□ 0.91
CIITA-208ENST00000572665 DCAF8L1A6NGE4 600 aa20.6■□□□□ 0.89
CIITA-208ENST00000572665 CCDC180Q9P1Z9 1646 aa20.6■□□□□ 0.89
CIITA-208ENST00000572665 ABCC9O60706 1549 aa20.45■□□□□ 0.86
CIITA-208ENST00000572665 MYCNP04198 464 aaPredicted RBP20.39■□□□□ 0.85
CIITA-208ENST00000572665 POTEDQ86YR6 584 aa20.33■□□□□ 0.85
CIITA-208ENST00000572665 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.31■□□□□ 0.84
CIITA-208ENST00000572665 ATXN8OSP0DMR3 200 aa20.15■□□□□ 0.82
CIITA-208ENST00000572665 U3KPZ7 1027 aaPredicted RBP20.08■□□□□ 0.81
CIITA-208ENST00000572665 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.96■□□□□ 0.79
CIITA-208ENST00000572665 HNRNPUL2Q1KMD3 747 aaKnown RBP19.96■□□□□ 0.79
CIITA-208ENST00000572665 SAMD1Q6SPF0 538 aaPredicted RBP19.92■□□□□ 0.78
CIITA-208ENST00000572665 ATF5Q9Y2D1 282 aaPredicted RBP19.82■□□□□ 0.76
CIITA-208ENST00000572665 APLP2Q06481 763 aa19.63■□□□□ 0.73
CIITA-208ENST00000572665 RNF39Q9H2S5 420 aa19.61■□□□□ 0.73
CIITA-208ENST00000572665 RB1CC1Q8TDY2 1594 aa19.58■□□□□ 0.73
CIITA-208ENST00000572665 NACADO15069 1562 aa19.45■□□□□ 0.7
CIITA-208ENST00000572665 ZNF219Q9P2Y4 722 aaPredicted RBP19.44■□□□□ 0.7
CIITA-208ENST00000572665 C1QBPQ07021 282 aaKnown RBP19.39■□□□□ 0.69
CIITA-208ENST00000572665 SPINK5Q9NQ38 1064 aaPredicted RBP19.36■□□□□ 0.69
CIITA-208ENST00000572665 DCAF8L2P0C7V8 631 aa19.29■□□□□ 0.68
CIITA-208ENST00000572665 TRHP20396 242 aaPredicted RBP19.27■□□□□ 0.68
CIITA-208ENST00000572665 FKBP8Q14318 412 aa19.27■□□□□ 0.68
CIITA-208ENST00000572665 CAPN15O75808 1086 aa19.24■□□□□ 0.67
CIITA-208ENST00000572665 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
CIITA-208ENST00000572665 UNC13AQ9UPW8 1703 aa19.08■□□□□ 0.65
CIITA-208ENST00000572665 POLA2Q14181 598 aa19.07■□□□□ 0.64
CIITA-208ENST00000572665 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
CIITA-208ENST00000572665 MKRN4PQ13434 485 aaPredicted RBP18.99■□□□□ 0.63
CIITA-208ENST00000572665 ZCCHC6Q5VYS8 1495 aaKnown RBP18.95■□□□□ 0.62
CIITA-208ENST00000572665 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
CIITA-208ENST00000572665 FBLN2P98095 1184 aa18.93■□□□□ 0.62
CIITA-208ENST00000572665 ABCB7O75027 752 aa18.92■□□□□ 0.62
CIITA-208ENST00000572665 BICRAQ9NZM4 1560 aa18.89■□□□□ 0.62
CIITA-208ENST00000572665 DSG3P32926 999 aa18.83■□□□□ 0.6
CIITA-208ENST00000572665 SHROOM4Q9ULL8 1493 aa18.8■□□□□ 0.6
CIITA-208ENST00000572665 ZBTB12Q9Y330 459 aaPredicted RBP18.8■□□□□ 0.6
CIITA-208ENST00000572665 SPDYE4A6NLX3 237 aa18.78■□□□□ 0.6
CIITA-208ENST00000572665 CACNB1Q02641 598 aaPredicted RBP18.71■□□□□ 0.59
CIITA-208ENST00000572665 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
CIITA-208ENST00000572665 PROM2Q8N271 834 aa18.58■□□□□ 0.56
CIITA-208ENST00000572665 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
CIITA-208ENST00000572665 EIF4G1Q04637 1599 aaKnown RBP18.48■□□□□ 0.55
CIITA-208ENST00000572665 CECR2Q9BXF3 1484 aa18.46■□□□□ 0.54
CIITA-208ENST00000572665 AMER1Q5JTC6 1135 aaPredicted RBP18.43■□□□□ 0.54
CIITA-208ENST00000572665 OSCARQ8IYS5 282 aa18.43■□□□□ 0.54
CIITA-208ENST00000572665 FBXO3Q9UK99 471 aa18.43■□□□□ 0.54
CIITA-208ENST00000572665 RTN4Q9NQC3 1192 aaKnown RBP18.41■□□□□ 0.54
CIITA-208ENST00000572665 SPDYE2BA6NHP3 402 aa18.34■□□□□ 0.53
CIITA-208ENST00000572665 SPDYE6P0CI01 402 aa18.34■□□□□ 0.53
CIITA-208ENST00000572665 SPDYE2Q495Y8 402 aa18.34■□□□□ 0.53
CIITA-208ENST00000572665 ZNF692Q9BU19 519 aaPredicted RBP18.33■□□□□ 0.52
CIITA-208ENST00000572665 SSUH2Q9Y2M2 353 aa18.28■□□□□ 0.52
CIITA-208ENST00000572665 VASPP50552 380 aaPredicted RBP18.2■□□□□ 0.5
CIITA-208ENST00000572665 IFNLR1Q8IU57 520 aaPredicted RBP17.99■□□□□ 0.47
CIITA-208ENST00000572665 STAG3Q9UJ98 1225 aa17.97■□□□□ 0.47
CIITA-208ENST00000572665 NCAPD3P42695 1498 aa17.91■□□□□ 0.46
CIITA-208ENST00000572665 RBM42Q9BTD8 480 aaKnown RBP17.91■□□□□ 0.46
CIITA-208ENST00000572665 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
CIITA-208ENST00000572665 SMARCA4P51532 1647 aa17.84■□□□□ 0.45
CIITA-208ENST00000572665 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
CIITA-208ENST00000572665 HMGXB3Q12766 1538 aa17.81■□□□□ 0.44
CIITA-208ENST00000572665 BAZ1AQ9NRL2 1556 aaPredicted RBP17.8■□□□□ 0.44
CIITA-208ENST00000572665 AKT1S1Q96B36 256 aa17.8■□□□□ 0.44
CIITA-208ENST00000572665 PLCD3Q8N3E9 789 aa17.77■□□□□ 0.44
CIITA-208ENST00000572665 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
CIITA-208ENST00000572665 KLHL34Q8N239 644 aa17.73■□□□□ 0.43
CIITA-208ENST00000572665 MIER1Q8N108 512 aa17.72■□□□□ 0.43
CIITA-208ENST00000572665 CUX2O14529 1486 aa17.71■□□□□ 0.43
CIITA-208ENST00000572665 BAZ1BQ9UIG0 1483 aaKnown RBP17.71■□□□□ 0.43
CIITA-208ENST00000572665 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
CIITA-208ENST00000572665 SPOCK2Q92563 424 aa17.68■□□□□ 0.42
CIITA-208ENST00000572665 SPDYE1Q8NFV5 336 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms