RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ZNF215Q9UL58 517 aaPredicted RBP10.78□□□□□ -0.68
SYNE2-224ENST00000557024 VPS13AQ96RL7 3174 aa10.78□□□□□ -0.68
SYNE2-224ENST00000557024 DCHS1Q96JQ0 3298 aa10.78□□□□□ -0.68
SYNE2-224ENST00000557024 PARP1P09874 1014 aaKnown RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 MX1P20591 662 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 IBSPP21815 317 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 CD52P31358 61 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 GHRHRQ02643 423 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 FBXO47Q5MNV8 452 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 METTL7BQ6UX53 244 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 TSHZ1Q6ZSZ6 1077 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 ZNF589Q86UQ0 364 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 FCHSD1Q86WN1 690 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 SMC5Q8IY18 1101 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 ADSSL1Q8N142 457 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 KREMEN2Q8NCW0 462 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 ATP8B4Q8TF62 1192 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 NKD2Q969F2 451 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 NEK1Q96PY6 1258 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 AGO3Q9H9G7 860 aaKnown RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 CDY2AQ9Y6F7 541 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 NRCAMQ92823 1304 aa10.77□□□□□ -0.69
SYNE2-224ENST00000557024 RIF1Q5UIP0 2472 aaKnown RBP10.77□□□□□ -0.69
SYNE2-224ENST00000557024 PLXNA3P51805 1871 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 KIAA1217Q5T5P2 1943 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 TRIM6-TRIM34B2RNG4 842 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 PCP11498 1178 aaKnown RBP10.76□□□□□ -0.69
SYNE2-224ENST00000557024 PPFIA1Q13136 1202 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 GNPTABQ3T906 1256 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 TAF2Q6P1X5 1199 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 RSPH3Q86UC2 560 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 RTN4RL1Q86UN2 441 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-224ENST00000557024 NPAS4Q8IUM7 802 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 CRIPAKQ8N1N5 446 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 STAG2Q8N3U4 1231 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 PTCD2Q8WV60 388 aaKnown RBP10.76□□□□□ -0.69
SYNE2-224ENST00000557024 DNAJB3Q8WWF6 145 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 SMOC2Q9H3U7 446 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 RNF41Q9H4P4 317 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-224ENST00000557024 PCDHA1Q9Y5I3 950 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 WDR87Q6ZQQ6 2873 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 ZMYM6O95789 1325 aa10.76□□□□□ -0.69
SYNE2-224ENST00000557024 SPATA31C2B4DYI2 1134 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 GCOM1H8Y6P7 765 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-224ENST00000557024 BRD1O95696 1058 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 POLR2MP0CAP2 368 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MARK3P27448 753 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 TECP42680 631 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MRPS9P82933 396 aaKnown RBP10.75□□□□□ -0.69
SYNE2-224ENST00000557024 SEMA3FQ13275 785 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MTMR3Q13615 1198 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 NEDD9Q14511 834 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 DUSP6Q16828 381 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MCMDC2Q4G0Z9 681 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 LLGL2Q6P1M3 1020 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 CHD1LQ86WJ1 897 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 IQCA1Q86XH1 822 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 ENAHQ8N8S7 591 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-224ENST00000557024 EVI5LQ96CN4 794 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 ZBTB10Q96DT7 871 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 LNPKQ9C0E8 428 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 S1PR5Q9H228 398 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MAP3K20Q9NYL2 800 aaKnown RBP10.75□□□□□ -0.69
SYNE2-224ENST00000557024 RTEL1Q9NZ71 1219 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 CDH22Q9UJ99 828 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 TUBE1Q9UJT0 475 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 GVINP1Q7Z2Y8 2422 aa10.75□□□□□ -0.69
SYNE2-224ENST00000557024 MED19A0JLT2 244 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 ZBTB5O15062 677 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 FIBPO43427 364 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 FGF18O76093 207 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 STAG3L1P0CL83 205 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 SCG2P13521 617 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 ERVFC1P60507 584 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 MRPS6P82932 125 aaKnown RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 NUCB1Q02818 461 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 NMIQ13287 307 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 GRIK4Q16099 956 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 CCDC178Q5BJE1 867 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 SPOUT1Q5T280 376 aaKnown RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 MCTP2Q6DN12 878 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 ANKRD54Q6NXT1 300 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 SYCE2Q6PIF2 218 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 HOMER1Q86YM7 354 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 UBALD2Q8IYN6 164 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 INPP4AQ96PE3 977 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 ZSCAN10Q96SZ4 725 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 CDCA3Q99618 268 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 FAM49AQ9H0Q0 323 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-224ENST00000557024 LRFN2Q9ULH4 789 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 SORCS3Q9UPU3 1222 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 PCDHB12Q9Y5F1 795 aa10.74□□□□□ -0.69
SYNE2-224ENST00000557024 FSD2A1L4K1 749 aa10.73□□□□□ -0.69
SYNE2-224ENST00000557024 MBLAC1A4D2B0 266 aaPredicted RBP10.73□□□□□ -0.69
SYNE2-224ENST00000557024 B4E1Z4 1266 aa10.73□□□□□ -0.69
SYNE2-224ENST00000557024 KLRF2D3W0D1 207 aa10.73□□□□□ -0.69
SYNE2-224ENST00000557024 TRIM66O15016 1216 aa10.73□□□□□ -0.69
SYNE2-224ENST00000557024 SRGAP2BP0DMP2 458 aa10.73□□□□□ -0.69
SYNE2-224ENST00000557024 TCF7P36402 384 aaPredicted RBP10.73□□□□□ -0.69
SYNE2-224ENST00000557024 IGBP1P78318 339 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms