RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 KMT5BQ4FZB7 885 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 Q4G0T1 1027 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 CLEC10AQ8IUN9 316 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 MSANTD4Q8NCY6 345 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 TRIM7Q9C029 511 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 LIMA1Q9UHB6 759 aaKnown RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 KIF13BQ9NQT8 1826 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 FAM196BA6NMK8 535 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 CA12O43570 354 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 STX10O60499 249 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 LUC7L3O95232 432 aaKnown RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 MTIF2P46199 727 aaKnown RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 CFAP58Q5T655 872 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 CFAP57Q96MR6 1250 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 NUP58Q9BVL2 599 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 INO80BQ9C086 356 aaPredicted RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 ZSWIM4Q9H7M6 989 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 FAM184BQ9ULE4 1060 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 PRR12Q9ULL5 1215 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 PYCARDQ9ULZ3 195 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 ITIH6Q6UXX5 1313 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 A0A1B0GTH6 734 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 AKR1B15C9JRZ8 316 aaPredicted RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 STAM2O75886 525 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 PSAPP07602 524 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 GCKP35557 465 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 ARHGAP4P98171 946 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 CDC42EP1Q00587 391 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 FOXR2Q6PJQ5 311 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 ZFP91Q96JP5 570 aaPredicted RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 LARSQ9P2J5 1176 aaKnown RBP8.38□□□□□ -1.07
USP54-210ENST00000466048 NRBP1Q9UHY1 535 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 JRKLQ9Y4A0 524 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 NEBLO76041 1014 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 KCNA3P22001 575 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 CCNE1P24864 410 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 SREBF1P36956 1147 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 RGS2P41220 211 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 DEFB115Q30KQ5 88 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 ICE2Q659A1 982 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 ADSSL1Q8N142 457 aa8.38□□□□□ -1.07
USP54-210ENST00000466048 A0A087WUV0 522 aaPredicted RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 KCNJ18B7U540 433 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 WNT10BO00744 389 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 WNT7AO00755 349 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 PPFIA4O75335 1185 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 TDP2O95551 362 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 CYP3A4P08684 503 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 MUTP22033 750 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 KCNJ12Q14500 433 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 WHAMMP3Q1A5X7 153 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 CCDC144BQ3MJ40 725 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 P2RX5Q93086 422 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SELENOOQ9BVL4 669 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 TRIM9Q9C026 710 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 MAF1Q9H063 256 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SCN9AQ15858 1988 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 GOLGA6CA6NDK9 693 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 DDX39AO00148 427 aaKnown RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 BUB1BO60566 1050 aaPredicted RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 GOLGA6DP0CG33 693 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 ATP1A3P13637 1013 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 ERCC3P19447 782 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SFNP31947 248 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 STX17P56962 302 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SNX16P57768 344 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 KRT76Q01546 638 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 FMR1Q06787 632 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP54-210ENST00000466048 MTMR2Q13614 643 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 PRR16Q569H4 304 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 CDKAL1Q5VV42 579 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 PROCA1Q8NCQ7 364 aaPredicted RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 DEPTORQ8TB45 409 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 CDCA5Q96FF9 252 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 PANX2Q96RD6 677 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 CCDC77Q9BR77 488 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 KATNAL1Q9BW62 490 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 TMEM39BQ9GZU3 492 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 GOLGA6AQ9NYA3 693 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 BAZ2BQ9UIF8 2168 aaKnown RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 MAFGO15525 162 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 GNA14O95837 355 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 GBP1P32455 592 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 PPIL2Q13356 520 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SETDB1Q15047 1291 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 SLC7A3Q8WY07 619 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 MBOAT7Q96N66 472 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 BAG1Q99933 345 aaPredicted RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 RANBP17Q9H2T7 1088 aaKnown RBP8.37□□□□□ -1.07
USP54-210ENST00000466048 PCDHB13Q9Y5F0 798 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 ADAMTSL1Q8N6G6 1762 aa8.37□□□□□ -1.07
USP54-210ENST00000466048 TMEM88BA6NKF7 163 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 CIITAP33076 1130 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 BACE1P56817 501 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 LRRC63Q05C16 580 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 TMEM119Q4V9L6 283 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 CEP85LQ5SZL2 805 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 TCERG1LQ5VWI1 586 aa8.36□□□□□ -1.07
USP54-210ENST00000466048 ZBED3Q96IU2 234 aaPredicted RBP8.36□□□□□ -1.07
USP54-210ENST00000466048 ZNF577Q9BSK1 485 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 406.6 ms