RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 Q4G0T1 1027 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 KLHDC7AQ5VTJ3 777 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 UPF1Q92900 1129 aaKnown RBP eCLIP17.67■□□□□ 0.42
USHBP1-202ENST00000324554 SGIP1Q9BQI5 828 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 ZHX3Q9H4I2 956 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 KIF13BQ9NQT8 1826 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 CASP5P51878 434 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 PSMC6P62333 389 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 ADAM9Q13443 819 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 ABCB5Q2M3G0 1257 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 EDRF1Q3B7T1 1238 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 PPP4R3CPQ6ZMV5 832 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 TMEM179Q6ZVK1 233 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 MS4A14Q96JA4 679 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 NOX5Q96PH1 765 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 TSPYL1Q9H0U9 437 aa17.67■□□□□ 0.42
USHBP1-202ENST00000324554 FAM86B1E9PN63 330 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 TBX3O15119 743 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 FAM86B2P0C5J1 330 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 PTGER2P43116 358 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 SLC20A2Q08357 652 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 USH1GQ495M9 461 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 CIAPIN1Q6FI81 312 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 RNF10Q8N5U6 811 aaKnown RBP17.66■□□□□ 0.42
USHBP1-202ENST00000324554 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.66■□□□□ 0.42
USHBP1-202ENST00000324554 RBM12Q9NTZ6 932 aaKnown RBP17.66■□□□□ 0.42
USHBP1-202ENST00000324554 RSPH14Q9UHP6 348 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 ENTPD3O75355 529 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 SPATA31C1P0DKV0 1188 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 NR2F2P24468 414 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 GIT2Q14161 759 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 CCDC181Q5TID7 509 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 GMCL1P1Q8NEA9 526 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 GJA3Q9Y6H8 435 aa17.66■□□□□ 0.42
USHBP1-202ENST00000324554 ATAD5Q96QE3 1844 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 MEIS1O00470 390 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 WNT10BO00744 389 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 NDUFB10O96000 172 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 RPA1P27694 616 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 SREBF1P36956 1147 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 PABPC4Q13310 644 aaKnown RBP eCLIP17.65■□□□□ 0.42
USHBP1-202ENST00000324554 MCTP2Q6DN12 878 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 FBXO11Q86XK2 927 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 SPICE1Q8N0Z3 855 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 ERMNQ8TAM6 284 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 GMCL1Q96IK5 515 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 RASSF4Q9H2L5 321 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 STIM2Q9P246 746 aa17.65■□□□□ 0.42
USHBP1-202ENST00000324554 SPDYE3A6NKU9 549 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 CETN3O15182 167 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 TAL1P17542 331 aaPredicted RBP17.64■□□□□ 0.42
USHBP1-202ENST00000324554 KCNH2Q12809 1159 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 SYT2Q8N9I0 419 aaPredicted RBP17.64■□□□□ 0.42
USHBP1-202ENST00000324554 TSEN2Q8NCE0 465 aaKnown RBP17.64■□□□□ 0.42
USHBP1-202ENST00000324554 REEP2Q9BRK0 252 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 GANQ9H2C0 597 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 DNM3Q9UQ16 869 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 CNTNAP1P78357 1384 aa17.64■□□□□ 0.42
USHBP1-202ENST00000324554 ASTN2O75129 1339 aaPredicted RBP17.64■□□□□ 0.41
USHBP1-202ENST00000324554 GOLGA6CA6NDK9 693 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 GOLGA6DP0CG33 693 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 MMP14P50281 582 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 RAPGEF1Q13905 1077 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 SYDE2Q5VT97 1194 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 SAMD7Q7Z3H4 446 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 FAM76AQ8TAV0 307 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 TBC1D5Q92609 795 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 RUBCNQ92622 972 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 GOLGA6AQ9NYA3 693 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 TRAF3IP3Q9Y228 551 aa17.64■□□□□ 0.41
USHBP1-202ENST00000324554 SHOX2O60902 331 aaPredicted RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 NPM3O75607 178 aaKnown RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 EPS15P42566 896 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 NAP1L1P55209 391 aaKnown RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 IKQ13123 557 aaPredicted RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 SLC18A3Q16572 532 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 SPDYE2Q495Y8 402 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 SFR1Q86XK3 245 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 FAM133AQ8N9E0 248 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 AIPL1Q9NZN9 384 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 ANKRD65E5RJM6 399 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 OPLAHO14841 1288 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 PPFIA4O75335 1185 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 FOSP01100 380 aaPredicted RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 HOXD13P35453 343 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 ECE1P42892 770 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 PAFAH1B1P43034 410 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 ARID5AQ03989 594 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 KNOP1Q1ED39 458 aaKnown RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 EPM2AIP1Q7L775 607 aaPredicted RBP17.63■□□□□ 0.41
USHBP1-202ENST00000324554 AGBL3Q8NEM8 1001 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 FAM20AQ96MK3 541 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 MYOZ2Q9NPC6 264 aa17.63■□□□□ 0.41
USHBP1-202ENST00000324554 A0A1W2PRG0 241 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 MSH4O15457 936 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 CIITAP33076 1130 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 EPHB4P54760 987 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 C8orf74Q6P047 294 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 SH3GL2Q99962 352 aa17.62■□□□□ 0.41
USHBP1-202ENST00000324554 LUC7LQ9NQ29 371 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms