RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	BMH2	P34730	273 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	YKL070W	P36087	169 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	ALG5	P40350	334 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	REE1	P40893	198 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	DLD2	P46681	530 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	ECM27	P47144	725 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	TIS11	P47977	285 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	APT1	P49435	187 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	BIO3	P50277	480 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	YGR066C	P53242	292 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	BUD32	P53323	261 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	MPP6	P53725	186 aa	Predicted RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	APJ1	P53940	528 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	ARK1	P53974	638 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	KTR6	P54070	446 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	UTP6	Q02354	440 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	KAP120	Q02932	1032 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	MRPS17	Q03246	237 aa	Predicted RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	YML037C	Q03703	340 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	RRB1	Q04225	511 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	CSI1	Q04368	295 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	IVY1	Q04934	453 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	TSR1	Q07381	788 aa	Known RBP	3.11	□□□□□ -1.91
UBP8	YMR223W	YPL272C	Q08984	517 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	ATG29	Q12092	213 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	TMS1	Q12116	473 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	NCE102	Q12207	173 aa	RIP-Chip data	3.11	□□□□□ -1.91	not detected
UBP8	YMR223W	SFG1	Q12507	346 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	RAD61	Q99359	647 aa		3.11	□□□□□ -1.91
UBP8	YMR223W	JIP3	O13555	125 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RPL6B	P05739	176 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	HIP1	P06775	603 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	GCD2	P12754	651 aa	Predicted RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	MSS116	P15424	664 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	HEM15	P16622	393 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	UBA1	P22515	1024 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	YIH1	P25637	258 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	HXT3	P32466	567 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	SUA5	P32579	426 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RML2	P32611	393 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	SLM4	P38247	162 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	ICS2	P38284	255 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	MLH1	P38920	769 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	MSS2	P40990	351 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	PET130	P47065	347 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	CGR1	P53188	120 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	YGR126W	P53274	230 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RPL6A	Q02326	176 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	MSC1	Q03104	513 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	BUD22	Q04347	519 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	RQC1	Q05468	723 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	VPS38	Q05919	439 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	STE23	Q06010	1027 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	YLL007C	Q07799	665 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	YDR061W	Q12298	539 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	HRT3	Q12347	344 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	TFB5	Q3E7C1	72 aa	Predicted RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	SUC2	P00724	532 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	GEX1	P25596	615 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	FAA1	P30624	700 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	YME2	P32843	850 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	KKQ8	P36004	724 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RPL32	P38061	130 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	AFG3	P39925	761 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	SSO2	P39926	295 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RTR1	P40084	226 aa	Predicted RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	HSH155	P49955	971 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	FMS1	P50264	508 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	YGR117C	P53270	476 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	YMR102C	Q03177	834 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	ATC1	Q04005	294 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	RPN9	Q04062	393 aa	Known RBP	3.1	□□□□□ -1.91
UBP8	YMR223W	YLR173W	Q06247	608 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	BCP1	Q06338	283 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	ESA1	Q08649	445 aa		3.1	□□□□□ -1.91
UBP8	YMR223W	CFT1	Q06632	1357 aa	Known RBP	3.09	□□□□□ -1.91
UBP8	YMR223W	SGS1	P35187	1447 aa		3.09	□□□□□ -1.91
UBP8	YMR223W	ARD1	P07347	238 aa	Predicted RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	SCH9	P11792	824 aa	Known RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	KSS1	P14681	368 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	SRV2	P17555	526 aa	Known RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	CKA2	P19454	339 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	ARO4	P32449	370 aa	Known RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	CMC1	P36064	111 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	ATP3	P38077	311 aa	Known RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	TCD1	P38756	429 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	YHR045W	P38775	560 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	CIN4	P39110	191 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	SHQ1	P40486	507 aa	Predicted RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	YRB2	P40517	327 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	GWT1	P47026	490 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	MND1	P53102	219 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	CAF40	P53829	373 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	PGA2	P53903	129 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	HEF3	P53978	1044 aa	Known RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	RSN1	Q03516	953 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	FMP40	Q08968	688 aa	Predicted RBP	3.09	□□□□□ -1.92
UBP8	YMR223W	YOR012W	Q12351	137 aa		3.09	□□□□□ -1.92
UBP8	YMR223W	MF(ALPHA)1	P01149	165 aa		3.08	□□□□□ -1.92
UBP8	YMR223W	RSR1	P13856	272 aa		3.08	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms