RNA–Protein interactions for RNA: YKL042W

SPC42, Transcript of Central plaque component of spindle pole body (SPB), yeast

Gene SPC42, Length 1,092 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC42	YKL042W	PEX27	Q08580	376 aa		4.83	□□□□□ -1.64
SPC42	YKL042W	TPT1	Q12272	230 aa	Known RBP	4.83	□□□□□ -1.64
SPC42	YKL042W	NCA2	Q12374	616 aa		4.83	□□□□□ -1.64
SPC42	YKL042W	RRP12	Q12754	1228 aa	Known RBP	4.83	□□□□□ -1.64
SPC42	YKL042W	ATP1	P07251	545 aa	Known RBP	4.82	□□□□□ -1.64
SPC42	YKL042W	ARF1	P11076	181 aa	Known RBP	4.82	□□□□□ -1.64
SPC42	YKL042W	RNA14	P25298	677 aa	Known RBP	4.82	□□□□□ -1.64
SPC42	YKL042W	SRB2	P34162	210 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	SPT10	P35208	640 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	DOA1	P36037	715 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	NAT2	P37293	288 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	FAA2	P39518	744 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	ATM1	P40416	690 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	STE24	P47154	453 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	IBD2	P53892	351 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	NOP6	Q07623	225 aa	Known RBP	4.82	□□□□□ -1.64
SPC42	YKL042W	SNX3	Q08826	162 aa	Known RBP	4.82	□□□□□ -1.64
SPC42	YKL042W	CEX1	Q12453	761 aa		4.82	□□□□□ -1.64
SPC42	YKL042W	CPR1	P14832	162 aa	Known RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	SPS22	P25380	463 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	LOS1	P33418	1100 aa	Predicted RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	PTK1	P36002	662 aa	Predicted RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	MIX23	P38162	196 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	PES4	P39684	611 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	MKT1	P40850	830 aa	Known RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	YJL213W	P40896	331 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	OST1	P41543	476 aa	Known RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	TOS3	P43637	560 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	SFH5	P47008	294 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	COS10	P52924	374 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	HST1	P53685	503 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	WSC2	P53832	503 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	CRZ1	P53968	678 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	ASA1	Q06822	443 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	RTC5	Q12108	567 aa	Known RBP	4.81	□□□□□ -1.64
SPC42	YKL042W	HIF1	Q12373	385 aa		4.81	□□□□□ -1.64
SPC42	YKL042W	MCK1	P21965	375 aa	Known RBP	4.8	□□□□□ -1.64
SPC42	YKL042W	PRO3	P32263	286 aa	Known RBP	4.8	□□□□□ -1.64
SPC42	YKL042W	SUR1	P33300	382 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	SKT5	P34226	696 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	SIM1	P40472	476 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	GOR1	P53839	350 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	BCH1	Q05029	724 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	LDS2	Q08218	356 aa		4.8	□□□□□ -1.64
SPC42	YKL042W	THP3	Q12049	470 aa	Known RBP	4.8	□□□□□ -1.64
SPC42	YKL042W	TPK3	P05986	398 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	THR4	P16120	514 aa	Known RBP	4.79	□□□□□ -1.64
SPC42	YKL042W	SAG1	P20840	650 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	YCL068C	P25593	260 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	MRP4	P32902	394 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	YBP1	P38315	674 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	MTC6	P38849	526 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	OSW5	P40219	148 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	SNL1	P40548	159 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	PRO2	P54885	456 aa	Known RBP	4.79	□□□□□ -1.64
SPC42	YKL042W	YMR310C	Q04867	317 aa	Predicted RBP	4.79	□□□□□ -1.64
SPC42	YKL042W	YOR012W	Q12351	137 aa		4.79	□□□□□ -1.64
SPC42	YKL042W	GDH1	P07262	454 aa	Known RBP	4.78	□□□□□ -1.64
SPC42	YKL042W	MAS1	P10507	462 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	RRF1	P38771	230 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	YDL186W	P48568	277 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	GPI8	P49018	411 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	TOS2	P50078	622 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	YGR117C	P53270	476 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	HXT11	P54862	567 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	SPR6	Q01684	191 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	CCE1	Q03702	353 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	RAX1	Q08760	435 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	TIP41	Q12199	356 aa		4.78	□□□□□ -1.64
SPC42	YKL042W	RNA1	P11745	407 aa	Known RBP	4.77	□□□□□ -1.65
SPC42	YKL042W	MSK1	P32048	576 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	AGA1	P32323	725 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	MUD1	P32605	298 aa	Known RBP	4.77	□□□□□ -1.65
SPC42	YKL042W	CHK1	P38147	527 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	YBR137W	P38276	179 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	YFL067W	P43537	175 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	RRP46	P53256	223 aa	Predicted RBP	4.77	□□□□□ -1.65
SPC42	YKL042W	MSO1	P53604	210 aa	Known RBP	4.77	□□□□□ -1.65
SPC42	YKL042W	MDY2	Q12285	212 aa		4.77	□□□□□ -1.65
SPC42	YKL042W	POM152	P39685	1337 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	HEM15	P16622	393 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	HMX1	P32339	317 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	YEF1	P32622	495 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	RET3	P53600	189 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	YPR078C	Q06813	372 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	PPT2	Q12036	173 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	YOP1	Q12402	180 aa		4.76	□□□□□ -1.65
SPC42	YKL042W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
SPC42	YKL042W	CAP2	P13517	287 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	EXG1	P23776	448 aa	Known RBP	4.75	□□□□□ -1.65
SPC42	YKL042W	PCH2	P38126	564 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	YDR089W	P38966	869 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	JLP2	P40206	208 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	IDP2	P41939	412 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	NCA3	P46955	337 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	YLR108C	Q12259	485 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	GLE1	Q12315	538 aa		4.75	□□□□□ -1.65
SPC42	YKL042W	DBR1	P24309	405 aa	Known RBP	4.74	□□□□□ -1.65
SPC42	YKL042W	TOA2	P32774	122 aa		4.74	□□□□□ -1.65
SPC42	YKL042W	LIN1	P38852	340 aa	Predicted RBP	4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 35.3 ms