RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ERAP1Q9NZ08 941 aa17.18■□□□□ 0.34
TRIM28-205ENST00000595028 ARIH1Q9Y4X5 557 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-205ENST00000595028 GRXCR1A8MXD5 290 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 TREHO43280 583 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 PARNO95453 639 aaKnown RBP17.17■□□□□ 0.34
TRIM28-205ENST00000595028 LARGE1O95461 756 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 GNAT1P11488 350 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 ACTN1P12814 892 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 CIITAP33076 1130 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 NEK4P51957 841 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 NPY5RQ15761 445 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 GLG1Q92896 1179 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 GTF3C6Q969F1 213 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 PCYT2Q99447 389 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 SMARCAD1Q9H4L7 1026 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 SETD4Q9NVD3 440 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 PTPRSQ13332 1948 aa17.17■□□□□ 0.34
TRIM28-205ENST00000595028 WDR81Q562E7 1941 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 ZBBXA8MT70 800 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 CTDNEP1O95476 244 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 CCNE2O96020 404 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 MARK3P27448 753 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 ADAM17P78536 824 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 PPFIA1Q13136 1202 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 GPNMBQ14956 572 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 ME3Q16798 604 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 ZNF618Q5T7W0 954 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 GALNT17Q6IS24 598 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 BLIDQ8IZY5 108 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 LENG9Q96B70 501 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 C22orf23Q9BZE7 217 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 FTOQ9C0B1 505 aaKnown RBP eCLIP17.16■□□□□ 0.34
TRIM28-205ENST00000595028 HCN4Q9Y3Q4 1203 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 SLC4A7Q9Y6M7 1214 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 SIP14410 1827 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 NRCAMQ92823 1304 aa17.16■□□□□ 0.34
TRIM28-205ENST00000595028 MYH9P35579 1960 aaKnown RBP17.15■□□□□ 0.34
TRIM28-205ENST00000595028 M0R2N6 131 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 DDX39AO00148 427 aaKnown RBP17.15■□□□□ 0.34
TRIM28-205ENST00000595028 IPO5O00410 1097 aaKnown RBP17.15■□□□□ 0.34
TRIM28-205ENST00000595028 DHX15O43143 795 aaKnown RBP17.15■□□□□ 0.34
TRIM28-205ENST00000595028 NBNO60934 754 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 CAND2O75155 1236 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 CXCL10P02778 98 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 IGFBP4P22692 258 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 THPOP40225 353 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 MBTPS1Q14703 1052 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 PRR16Q569H4 304 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 NECAB1Q8N987 351 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 ZNF577Q9BSK1 485 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 LRFN3Q9BTN0 628 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 AZI2Q9H6S1 392 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 TRANK1O15050 2925 aa17.15■□□□□ 0.34
TRIM28-205ENST00000595028 MICAL3Q7RTP6 2002 aa17.14■□□□□ 0.34
TRIM28-205ENST00000595028 EDIL3O43854 480 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 BAIAP3O94812 1187 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 ATG7O95352 703 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 BMP1P13497 986 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 RAB30Q15771 203 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 GRIK4Q16099 956 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 TBCKQ8TEA7 893 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 TBC1D22BQ9NU19 505 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 KCNJ14Q9UNX9 436 aa17.14■□□□□ 0.33
TRIM28-205ENST00000595028 IGKV6D-21A0A0A0MT36 114 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 RSPH10B2B2RC85 870 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 DTNBO60941 627 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 RSPH10BP0C881 870 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 ATP2A2P16615 1042 aaKnown RBP17.13■□□□□ 0.33
TRIM28-205ENST00000595028 XBP1P17861 261 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 USP11P51784 963 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 CNKSR3Q6P9H4 555 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 PLPPR4Q7Z2D5 763 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 UIMC1Q96RL1 719 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 SLC9A7Q96T83 725 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 PHF20Q9BVI0 1012 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 ORC3Q9UBD5 711 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-205ENST00000595028 TUBE1Q9UJT0 475 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 TRPC6Q9Y210 931 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 MUC6Q6W4X9 2439 aa17.13■□□□□ 0.33
TRIM28-205ENST00000595028 MBLAC1A4D2B0 266 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-205ENST00000595028 CTSHP09668 335 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 FDPSP14324 419 aaKnown RBP17.12■□□□□ 0.33
TRIM28-205ENST00000595028 STAT5BP51692 787 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 ST3GAL1Q11201 340 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 PLCB4Q15147 1175 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 ZNF746Q6NUN9 644 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-205ENST00000595028 TAF2Q6P1X5 1199 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 ABHD15Q6UXT9 468 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 KRT25Q7Z3Z0 450 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 CCDC60Q8IWA6 550 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-205ENST00000595028 NSUN7Q8NE18 718 aaKnown RBP17.12■□□□□ 0.33
TRIM28-205ENST00000595028 WASF1Q92558 559 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 EPHX3Q9H6B9 360 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 TCEAL9Q9UHQ7 104 aa17.12■□□□□ 0.33
TRIM28-205ENST00000595028 BACH1O14867 736 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 MSH4O15457 936 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 TDP2O95551 362 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 INSRRP14616 1297 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 KCNJ6P48051 423 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 SLC26A2P50443 739 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms