RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	TRIM13	O60858	407 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	CLASP2	O75122	1294 aa	Known RBP	4.57	□□□□□ -1.68
USP28-210	ENST00000542033	KRT37	O76014	449 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	LRG1	P02750	347 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	INHBB	P09529	407 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	FAH	P16930	419 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	PTPN1	P18031	435 aa	Known RBP	4.57	□□□□□ -1.68
USP28-210	ENST00000542033	THBS2	P35442	1172 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	SARS	P49591	514 aa	Known RBP	4.57	□□□□□ -1.68
USP28-210	ENST00000542033	ITGA1	P56199	1179 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	SMAD4	Q13485	552 aa	Known RBP	4.57	□□□□□ -1.68
USP28-210	ENST00000542033	CR1L	Q2VPA4	569 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	HHIPL2	Q6UWX4	724 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	CARF	Q8N187	725 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	NOX5	Q96PH1	765 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	TARS2	Q9BW92	718 aa	Known RBP	4.57	□□□□□ -1.68
USP28-210	ENST00000542033	BOC	Q9BWV1	1114 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	HSPBP1	Q9NZL4	362 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	ZKSCAN5	Q9Y2L8	839 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	TELO2	Q9Y4R8	837 aa		4.57	□□□□□ -1.68
USP28-210	ENST00000542033	PTPDC1	A2A3K4	754 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	PRAMEF25	A6NGN4	478 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	PDE8A	O60658	829 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	GAS7	O60861	476 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	RPL13	P26373	211 aa	Known RBP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	SLURP1	P55000	103 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	IRF9	Q00978	393 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	SART3	Q15020	963 aa	Known RBP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	EGFLAM	Q63HQ2	1017 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	CPZ	Q66K79	652 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	VASN	Q6EMK4	673 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	PKN3	Q6P5Z2	889 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	TTLL10	Q6ZVT0	673 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	ZNF526	Q8TF50	670 aa	Predicted RBP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
USP28-210	ENST00000542033	USP40	Q9NVE5	1235 aa		4.56	□□□□□ -1.68
USP28-210	ENST00000542033	FAM90A27P	A6NNH2	459 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033		H7C1D1	291 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	CBX4	O00257	560 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	PPM1G	O15355	546 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	POU3F2	P20265	443 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	GJA9	P57773	515 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	DLX2	Q07687	328 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	ZNF174	Q15697	407 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	CT47A1	Q5JQC4	288 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	ERICH6B	Q5W0A0	696 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	TMC5	Q6UXY8	1006 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	KIF18B	Q86Y91	864 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	LEO1	Q8WVC0	666 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	SPATA25	Q9BR10	227 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	TMX1	Q9H3N1	280 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	PCIF1	Q9H4Z3	704 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	KCNH7	Q9NS40	1196 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	IFT57	Q9NWB7	429 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.55	□□□□□ -1.68
USP28-210	ENST00000542033	ARHGAP28	Q9P2N2	729 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	B4GALT6	Q9UBX8	382 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	MAPRE3	Q9UPY8	281 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033	PRKAB1	Q9Y478	270 aa		4.55	□□□□□ -1.68
USP28-210	ENST00000542033		A0A087X0B3	334 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033		A0A1B0GTL3	188 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	ANKRD62	A6NC57	917 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	GSG1L2	A8MUP6	293 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	ACOT7	O00154	380 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	TRAF5	O00463	557 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	ENO2	P09104	434 aa	Predicted RBP	4.54	□□□□□ -1.68
USP28-210	ENST00000542033	SOX5	P35711	763 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	SCNN1B	P51168	640 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	MECP2	P51608	486 aa	Known RBP	4.54	□□□□□ -1.68
USP28-210	ENST00000542033	CTSW	P56202	376 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	ADAM9	Q13443	819 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	TMEM132B	Q14DG7	1078 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
USP28-210	ENST00000542033	FAM26F	Q5R3K3	315 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	RNF187	Q5TA31	235 aa	Predicted RBP	4.54	□□□□□ -1.68
USP28-210	ENST00000542033	PRAMEF18	Q5VWM3	479 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	CD276	Q5ZPR3	534 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	OTOP1	Q7RTM1	612 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	STK32C	Q86UX6	486 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	FAM124A	Q86V42	546 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	NOSTRIN	Q8IVI9	506 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	OR2W6P	Q8NHA6	318 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	ADAMTS17	Q8TE56	1095 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	CHAC2	Q8WUX2	184 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	SYT3	Q9BQG1	590 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	L2HGDH	Q9H9P8	463 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	DLL4	Q9NR61	685 aa		4.54	□□□□□ -1.68
USP28-210	ENST00000542033	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.53	□□□□□ -1.68
USP28-210	ENST00000542033	FOXP2	O15409	715 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	FBXO21	O94952	628 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	F2	P00734	622 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	C4BPA	P04003	597 aa	Known RBP	4.53	□□□□□ -1.68
USP28-210	ENST00000542033	HOXA5	P20719	270 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	CNGA1	P29973	690 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	MASP1	P48740	699 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	KIF11	P52732	1056 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	HERVK_113	P62684	666 aa		4.53	□□□□□ -1.68
USP28-210	ENST00000542033	PFKP	Q01813	784 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms