RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 AEBP2Q6ZN18 517 aaPredicted RBP17.34■□□□□ 0.37
USP28-210ENST00000542033 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
USP28-210ENST00000542033 SENP3Q9H4L4 574 aaPredicted RBP14.85□□□□□ -0.03
USP28-210ENST00000542033 PHF23Q9BUL5 403 aaPredicted RBP14.83□□□□□ -0.04
USP28-210ENST00000542033 PLPPR3Q6T4P5 718 aa13.79□□□□□ -0.2
USP28-210ENST00000542033 FOXD1Q16676 465 aa13.78□□□□□ -0.2
USP28-210ENST00000542033 POTEDQ86YR6 584 aa13.58□□□□□ -0.24
USP28-210ENST00000542033 ADRA2BP18089 450 aa13.11□□□□□ -0.31
USP28-210ENST00000542033 PPP6R1Q9UPN7 881 aa13.1□□□□□ -0.31
USP28-210ENST00000542033 MSH5O43196 834 aa13.07□□□□□ -0.32
USP28-210ENST00000542033 PIAS4Q8N2W9 510 aaPredicted RBP12.96□□□□□ -0.33
USP28-210ENST00000542033 SCAF1Q9H7N4 1312 aaKnown RBP12.12□□□□□ -0.47
USP28-210ENST00000542033 PPP4R3CPQ6ZMV5 832 aa12.11□□□□□ -0.47
USP28-210ENST00000542033 MAPK8IP2Q13387 824 aaPredicted RBP11.88□□□□□ -0.51
USP28-210ENST00000542033 NCBP3Q53F19 620 aaKnown RBP11.85□□□□□ -0.51
USP28-210ENST00000542033 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
USP28-210ENST00000542033 DMRT2Q9Y5R5 561 aa11.81□□□□□ -0.52
USP28-210ENST00000542033 KCNA4P22459 653 aa11.72□□□□□ -0.53
USP28-210ENST00000542033 RNF216Q9NWF9 866 aaPredicted RBP11.59□□□□□ -0.55
USP28-210ENST00000542033 NPM3O75607 178 aaKnown RBP11.58□□□□□ -0.56
USP28-210ENST00000542033 HOXD11P31277 338 aaPredicted RBP11.53□□□□□ -0.56
USP28-210ENST00000542033 CACNB1Q02641 598 aaPredicted RBP11.41□□□□□ -0.58
USP28-210ENST00000542033 DCAF8L1A6NGE4 600 aa11.32□□□□□ -0.6
USP28-210ENST00000542033 DNAJC5BQ9UF47 199 aa11.3□□□□□ -0.6
USP28-210ENST00000542033 SLC4A1APQ9BWU0 796 aaKnown RBP11.2□□□□□ -0.62
USP28-210ENST00000542033 RNF39Q9H2S5 420 aa11.08□□□□□ -0.64
USP28-210ENST00000542033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP28-210ENST00000542033 C1QBPQ07021 282 aaKnown RBP10.94□□□□□ -0.66
USP28-210ENST00000542033 SLC4A2P04920 1241 aa10.91□□□□□ -0.66
USP28-210ENST00000542033 FOXD4L1Q9NU39 408 aa10.87□□□□□ -0.67
USP28-210ENST00000542033 U3KPZ7 1027 aaPredicted RBP10.79□□□□□ -0.68
USP28-210ENST00000542033 EHMT2Q96KQ7 1210 aa10.78□□□□□ -0.68
USP28-210ENST00000542033 MYCNP04198 464 aaPredicted RBP10.76□□□□□ -0.69
USP28-210ENST00000542033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.75□□□□□ -0.69
USP28-210ENST00000542033 HNRNPUL2Q1KMD3 747 aaKnown RBP10.75□□□□□ -0.69
USP28-210ENST00000542033 ZBTB22O15209 634 aa10.74□□□□□ -0.69
USP28-210ENST00000542033 APLP2Q06481 763 aa10.69□□□□□ -0.7
USP28-210ENST00000542033 SAMD1Q6SPF0 538 aaPredicted RBP10.69□□□□□ -0.7
USP28-210ENST00000542033 CSRNP3Q8WYN3 585 aa10.66□□□□□ -0.7
USP28-210ENST00000542033 ATXN8OSP0DMR3 200 aa10.52□□□□□ -0.73
USP28-210ENST00000542033 CAPN15O75808 1086 aa10.51□□□□□ -0.73
USP28-210ENST00000542033 POTEHQ6S545 545 aa10.51□□□□□ -0.73
USP28-210ENST00000542033 SPINK5Q9NQ38 1064 aaPredicted RBP10.48□□□□□ -0.73
USP28-210ENST00000542033 ZNF219Q9P2Y4 722 aaPredicted RBP10.48□□□□□ -0.73
USP28-210ENST00000542033 TRHP20396 242 aaPredicted RBP10.43□□□□□ -0.74
USP28-210ENST00000542033 ATF5Q9Y2D1 282 aaPredicted RBP10.37□□□□□ -0.75
USP28-210ENST00000542033 DSG3P32926 999 aa10.31□□□□□ -0.76
USP28-210ENST00000542033 ABCB7O75027 752 aa10.27□□□□□ -0.77
USP28-210ENST00000542033 POLA2Q14181 598 aa10.24□□□□□ -0.77
USP28-210ENST00000542033 ZBTB12Q9Y330 459 aaPredicted RBP10.17□□□□□ -0.78
USP28-210ENST00000542033 FBLN2P98095 1184 aa10.08□□□□□ -0.8
USP28-210ENST00000542033 MKRN4PQ13434 485 aaPredicted RBP9.93□□□□□ -0.82
USP28-210ENST00000542033 RBM42Q9BTD8 480 aaKnown RBP9.93□□□□□ -0.82
USP28-210ENST00000542033 OSCARQ8IYS5 282 aa9.89□□□□□ -0.83
USP28-210ENST00000542033 SPDYE2BA6NHP3 402 aa9.84□□□□□ -0.83
USP28-210ENST00000542033 SPDYE6P0CI01 402 aa9.84□□□□□ -0.83
USP28-210ENST00000542033 SPDYE2Q495Y8 402 aa9.84□□□□□ -0.83
USP28-210ENST00000542033 ZNF692Q9BU19 519 aaPredicted RBP9.78□□□□□ -0.84
USP28-210ENST00000542033 SPDYE4A6NLX3 237 aa9.75□□□□□ -0.85
USP28-210ENST00000542033 AKT1S1Q96B36 256 aa9.75□□□□□ -0.85
USP28-210ENST00000542033 CHRDL2Q6WN34 429 aa9.73□□□□□ -0.85
USP28-210ENST00000542033 SSUH2Q9Y2M2 353 aa9.72□□□□□ -0.85
USP28-210ENST00000542033 FKBP8Q14318 412 aa9.69□□□□□ -0.86
USP28-210ENST00000542033 PABPN1Q86U42 306 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP28-210ENST00000542033 REM2Q8IYK8 340 aaPredicted RBP9.62□□□□□ -0.87
USP28-210ENST00000542033 SPDYE1Q8NFV5 336 aaPredicted RBP9.57□□□□□ -0.88
USP28-210ENST00000542033 SP7Q8TDD2 431 aaPredicted RBP9.57□□□□□ -0.88
USP28-210ENST00000542033 PROM2Q8N271 834 aa9.55□□□□□ -0.88
USP28-210ENST00000542033 STAG3Q9UJ98 1225 aa9.53□□□□□ -0.88
USP28-210ENST00000542033 PITPNM1O00562 1244 aa9.5□□□□□ -0.89
USP28-210ENST00000542033 CLEC11AQ9Y240 323 aa9.5□□□□□ -0.89
USP28-210ENST00000542033 FBXO3Q9UK99 471 aa9.44□□□□□ -0.9
USP28-210ENST00000542033 PRR29P0C7W0 189 aa9.43□□□□□ -0.9
USP28-210ENST00000542033 PIP4P2Q8N4L2 257 aa9.42□□□□□ -0.9
USP28-210ENST00000542033 HAX1O00165 279 aa9.35□□□□□ -0.91
USP28-210ENST00000542033 FXR2P51116 673 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP28-210ENST00000542033 PLEKHG5O94827 1062 aa9.32□□□□□ -0.92
USP28-210ENST00000542033 PRKAR2AP13861 404 aaKnown RBP9.28□□□□□ -0.92
USP28-210ENST00000542033 PLCD3Q8N3E9 789 aa9.27□□□□□ -0.93
USP28-210ENST00000542033 MIER1Q8N108 512 aa9.26□□□□□ -0.93
USP28-210ENST00000542033 VASPP50552 380 aaPredicted RBP9.25□□□□□ -0.93
USP28-210ENST00000542033 CREBZFQ9NS37 354 aa9.23□□□□□ -0.93
USP28-210ENST00000542033 CHADLQ6NUI6 762 aa9.22□□□□□ -0.93
USP28-210ENST00000542033 ZBTB47Q9UFB7 747 aaPredicted RBP9.22□□□□□ -0.93
USP28-210ENST00000542033 EVX2Q03828 476 aa9.21□□□□□ -0.94
USP28-210ENST00000542033 NPM1P06748 294 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP28-210ENST00000542033 FARP1Q9Y4F1 1045 aaPredicted RBP9.17□□□□□ -0.94
USP28-210ENST00000542033 KLHL34Q8N239 644 aa9.14□□□□□ -0.95
USP28-210ENST00000542033 MNX1P50219 401 aaPredicted RBP9.11□□□□□ -0.95
USP28-210ENST00000542033 IFNLR1Q8IU57 520 aaPredicted RBP9.07□□□□□ -0.96
USP28-210ENST00000542033 PAK3O75914 559 aaPredicted RBP9.06□□□□□ -0.96
USP28-210ENST00000542033 C19orf67A6NJJ6 358 aa9.04□□□□□ -0.96
USP28-210ENST00000542033 SPOCK2Q92563 424 aa9.04□□□□□ -0.96
USP28-210ENST00000542033 CD44P16070 742 aaKnown RBP9.02□□□□□ -0.97
USP28-210ENST00000542033 FAM212AQ96EL1 285 aa9□□□□□ -0.97
USP28-210ENST00000542033 NUBP1P53384 320 aa8.99□□□□□ -0.97
USP28-210ENST00000542033 LHX8Q68G74 356 aa8.99□□□□□ -0.97
USP28-210ENST00000542033 GABBR2O75899 941 aa8.97□□□□□ -0.97
USP28-210ENST00000542033 TSPYL2Q9H2G4 693 aaPredicted RBP8.96□□□□□ -0.98
USP28-210ENST00000542033 ZRANB1Q9UGI0 708 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms