RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 SLC17A8Q8NDX2 589 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 MYLIPQ8WY64 445 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 TIFAQ96CG3 184 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 PCYT2Q99447 389 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 MTIF3Q9H2K0 278 aaKnown RBP17.14■□□□□ 0.33
LIMS1-212ENST00000474038 TBC1D22BQ9NU19 505 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 ZNF215Q9UL58 517 aaPredicted RBP17.14■□□□□ 0.33
LIMS1-212ENST00000474038 EYSQ5T1H1 3165 aa17.14■□□□□ 0.33
LIMS1-212ENST00000474038 TMEM265A0A087WTH1 108 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 RBAK-RBAKDNI3L0D1 243 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 PITPNM1O00562 1244 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 LGR5O75473 907 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 ATG7O95352 703 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 BFSP2Q13515 415 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 HIC1Q14526 733 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 LETM2Q2VYF4 491 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 RETREG2Q8NC44 543 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 FBXO18Q8NFZ0 1043 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 DHX38Q92620 1227 aaKnown RBP17.13■□□□□ 0.33
LIMS1-212ENST00000474038 SLC5A5Q92911 643 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 EMSYQ7Z589 1322 aa17.13■□□□□ 0.33
LIMS1-212ENST00000474038 GBF1Q92538 1859 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 LOXHD1Q8IVV2 1947 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 ZBBXA8MT70 800 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 SMIM10L2AP0DMW4 78 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 SMIM10L2BP0DMW5 78 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 ZNF200P98182 395 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-212ENST00000474038 GRIN2CQ14957 1233 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 SAFBQ15424 915 aaKnown RBP eCLIP17.12■□□□□ 0.33
LIMS1-212ENST00000474038 PPP4R3AQ6IN85 833 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 ABHD15Q6UXT9 468 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 GLG1Q92896 1179 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 GJA10Q969M2 543 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 RNPEPQ9H4A4 650 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 SMARCAD1Q9H4L7 1026 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 ZNF576Q9H609 170 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 ERAP1Q9NZ08 941 aa17.12■□□□□ 0.33
LIMS1-212ENST00000474038 DDX25Q9UHL0 483 aaKnown RBP17.12■□□□□ 0.33
LIMS1-212ENST00000474038 IGKV6D-21A0A0A0MT36 114 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 SLC37A4O43826 429 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 PFKMP08237 780 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 GCFC2P16383 781 aaKnown RBP17.11■□□□□ 0.33
LIMS1-212ENST00000474038 HOXC8P31273 242 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 RFC2P35250 354 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 KRT76Q01546 638 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 ZNF746Q6NUN9 644 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-212ENST00000474038 ETNPPLQ8TBG4 499 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 CAGE1Q8TC20 777 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 WNT8BQ93098 351 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 RIT2Q99578 217 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 AZI2Q9H6S1 392 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 SLC4A7Q9Y6M7 1214 aa17.11■□□□□ 0.33
LIMS1-212ENST00000474038 C17orf102A2RUQ5 167 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 CCNT1O60563 726 aaKnown RBP17.1■□□□□ 0.33
LIMS1-212ENST00000474038 GAS7O60861 476 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 PSMD10O75832 226 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 MARK3P27448 753 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 STAT5BP51692 787 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 RABGGTBP53611 331 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 LRCH2Q5VUJ6 765 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 PLPPR4Q7Z2D5 763 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 CCDC155Q8N6L0 562 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 AFAP1L1Q8TED9 768 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 NAP1L4Q99733 375 aaKnown RBP17.1■□□□□ 0.33
LIMS1-212ENST00000474038 FTOQ9C0B1 505 aaKnown RBP eCLIP17.1■□□□□ 0.33
LIMS1-212ENST00000474038 SETD4Q9NVD3 440 aa17.1■□□□□ 0.33
LIMS1-212ENST00000474038 YBX2Q9Y2T7 364 aaKnown RBP17.1■□□□□ 0.33
LIMS1-212ENST00000474038 CKBP12277 381 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 FOSL2P15408 326 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 SELPP16109 830 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 GJB2P29033 226 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 CUL4AQ13619 759 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 GPNMBQ14956 572 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 RAB30Q15771 203 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 MIS18BP1Q6P0N0 1132 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 LRRC8DQ7L1W4 858 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 CCDC60Q8IWA6 550 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-212ENST00000474038 SMAP1Q8IYB5 467 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-212ENST00000474038 ATP6V0A1Q93050 837 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 TEKT3Q9BXF9 490 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 NKX2-4Q9H2Z4 354 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 FOXP1Q9H334 677 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-212ENST00000474038 KCNMB3Q9NPA1 279 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 TCEAL9Q9UHQ7 104 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 MSRAQ9UJ68 235 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 KIF3AQ9Y496 699 aa17.09■□□□□ 0.33
LIMS1-212ENST00000474038 MYO9BQ13459 2157 aa17.08■□□□□ 0.33
LIMS1-212ENST00000474038 NRCAMQ92823 1304 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 WNT7AO00755 349 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 BACH1O14867 736 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 TREHO43280 583 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 ACTN1P12814 892 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 MYOGP15173 224 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 ADAM17P78536 824 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 RBL2Q08999 1139 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 PTK7Q13308 1070 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 PLCB4Q15147 1175 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 TRIM71Q2Q1W2 868 aaKnown RBP17.08■□□□□ 0.32
LIMS1-212ENST00000474038 FAM160B1Q5W0V3 765 aa17.08■□□□□ 0.32
LIMS1-212ENST00000474038 SWSAP1Q6NVH7 229 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms