RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PSMC6P62333 389 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 ERVK-24P63145 666 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 KRT83P78385 493 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 RASSF7Q02833 373 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SPP2Q13103 211 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 MTMR2Q13614 643 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 ALCAMQ13740 583 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 COG2Q14746 738 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SYT10Q6XYQ8 523 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 STXBP4Q6ZWJ1 553 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SLC17A8Q8NDX2 589 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 GOLGA5Q8TBA6 731 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 HPS3Q969F9 1004 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 SENP7Q9BQF6 1050 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 REEP2Q9BRK0 252 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 MKNK1Q9BUB5 465 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 BHMT2Q9H2M3 363 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 RPAP3Q9H6T3 665 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 ZSWIM4Q9H7M6 989 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 METTL14Q9HCE5 456 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 AGO4Q9HCK5 861 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 KCNH7Q9NS40 1196 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 TYW1Q9NV66 732 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 HOXC10Q9NYD6 342 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 CGNQ9P2M7 1197 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 DNAI1Q9UI46 699 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 FBXL5Q9UKA1 691 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 DAAM1Q9Y4D1 1078 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 GJA3Q9Y6H8 435 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF541Q9H0D2 1346 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 RBBP6Q7Z6E9 1792 aaKnown RBP8.42□□□□□ -1.06
COL6A3-208ENST00000468792 PARP14Q460N5 1801 aa8.42□□□□□ -1.06
COL6A3-208ENST00000468792 RLFQ13129 1914 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 PHIPQ8WWQ0 1821 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 GTPBP10A4D1E9 387 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 SOWAHDA6NJG2 315 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 EIF3CLB5ME19 914 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 RNF225M0QZC1 329 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 TRAF5O00463 557 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 NFIBO00712 420 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 RRP9O43818 475 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 COBLO75128 1261 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 TBCAO75347 108 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 NDUFA10O95299 355 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 LCA5LO95447 670 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 SSBP05455 408 aaKnown RBP eCLIP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 ARP10275 920 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 SFNP31947 248 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 CYLC1P35663 651 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 RPS6P62753 249 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 MAP3K9P80192 1104 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 MRPS9P82933 396 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 GOLGA8FQ08AF8 430 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 GOLGA8DPQ0D2H9 430 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 PABPC4Q13310 644 aaKnown RBP eCLIP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 ZYXQ15942 572 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 PTPN21Q16825 1174 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 ANGEL2Q5VTE6 544 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 WDR59Q6PJI9 974 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 CATSPERGQ6ZRH7 1159 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 VSIG10LQ86VR7 867 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 SLC9A9Q8IVB4 645 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 CPLX3Q8WVH0 158 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 UPF1Q92900 1129 aaKnown RBP eCLIP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 KCNN1Q92952 543 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 GPRASP2Q96D09 838 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 DYDC2Q96IM9 177 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 CDHR1Q96JP9 859 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 TRERF1Q96PN7 1200 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 WRNIP1Q96S55 665 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 EIF3CQ99613 913 aaKnown RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 STRA6Q9BX79 667 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 TANGO6Q9C0B7 1094 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 UNC45AQ9H3U1 944 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 ST6GALNAC4Q9H4F1 302 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 HAUS4Q9H6D7 363 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 PARVGQ9HBI0 331 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 COL20A1Q9P218 1284 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 PPP1R1BQ9UD71 204 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 MYO6Q9UM54 1294 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 AFG3L2Q9Y4W6 797 aa8.41□□□□□ -1.06
COL6A3-208ENST00000468792 CTDP1Q9Y5B0 961 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-208ENST00000468792 ASTN2O75129 1339 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 SSU72P8A0A1W2PR75 194 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 KIF5CO60282 957 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 DKC1O60832 514 aaKnown RBP eCLIP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ALAS1P13196 640 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 SCP2P22307 547 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ANXA13P27216 316 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 CASQ1P31415 396 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 HOXD13P35453 343 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 QARSP47897 775 aaKnown RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 JAK3P52333 1124 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 GNG11P61952 73 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 KRT76Q01546 638 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ADAM9Q13443 819 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 MTMR1Q13613 665 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PGM5Q15124 567 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms