RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 PAFAH1B1P43034 410 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 MATR3P43243 847 aaKnown RBP eCLIP15.72■□□□□ 0.111e-9■■■■■ 38.3
LIG1-202ENST00000427526 POLR2FP61218 127 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 TDRD12Q587J7 1177 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 RSBN1LQ6PCB5 846 aaPredicted RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 LSM14BQ9BX40 385 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 ATAD5Q96QE3 1844 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 CYP3A7-CYP3A51PA0A087WV96 503 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 SLC26A4O43511 780 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 SHOX2O60902 331 aaPredicted RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 CYP3A7P24462 503 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 MRPS25P82663 173 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 APBA1Q02410 837 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 NAB2Q15742 525 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 ARSHQ5FYA8 562 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 CCDC181Q5TID7 509 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 SND1Q7KZF4 910 aaKnown RBP eCLIP15.72■□□□□ 0.11
LIG1-202ENST00000427526 NELFCDQ8IXH7 590 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 MBOAT7Q96N66 472 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 SH3GL2Q99962 352 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 TSPYL1Q9H0U9 437 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 EMILIN3Q9NT22 766 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 RBM12Q9NTZ6 932 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 AIPL1Q9NZN9 384 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 BCCIPQ9P287 314 aaKnown RBP eCLIP15.72■□□□□ 0.11
LIG1-202ENST00000427526 RNF14Q9UBS8 474 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.72■□□□□ 0.11
LIG1-202ENST00000427526 ZNF646O15015 1829 aaPredicted RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 POTEB3A0JP26 581 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 POTECB2RU33 542 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L15C9J2P7 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L13C9JLJ4 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L11C9JVI0 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L18D6R9N7 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L22D6RA61 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L17D6RBQ6 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L19D6RCP7 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L20D6RJB6 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 SSBP05455 408 aaKnown RBP eCLIP15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP11P51784 963 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L24Q0WX57 530 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 SLC18A3Q16572 532 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 GLE1Q53GS7 698 aaKnown RBP15.71■□□□□ 0.11
LIG1-202ENST00000427526 SLFN13Q68D06 897 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 USP17L6PQ6QN14 398 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 POTEBQ6S5H4 581 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 MKL1Q969V6 931 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 CSRNP1Q96S65 589 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 NYAP2Q9P242 653 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 RRP15Q9Y3B9 282 aaKnown RBP15.71■□□□□ 0.11
LIG1-202ENST00000427526 SIPA1L1O43166 1804 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 ENTPD3O75355 529 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 EPHB4P54760 987 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 ICA1Q05084 483 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 ABCB5Q2M3G0 1257 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 HERC4Q5GLZ8 1057 aaPredicted RBP15.71■□□□□ 0.11
LIG1-202ENST00000427526 MS4A14Q96JA4 679 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 PSMD1Q99460 953 aa15.71■□□□□ 0.11
LIG1-202ENST00000427526 COL4A5P29400 1685 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 SLC12A3P55017 1021 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 CFAP221Q4G0U5 840 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 EMBQ6PCB8 327 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 GPBP1Q86WP2 473 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 CAVIN3Q969G5 261 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 GANQ9H2C0 597 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 PCDHGC5Q9Y5F6 944 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 SPDYE2BA6NHP3 402 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 MED24O75448 989 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 ZBTB7AO95365 584 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 GH2P01242 217 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 VIL1P09327 827 aaKnown RBP15.7■□□□□ 0.1
LIG1-202ENST00000427526 SPDYE6P0CI01 402 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 KLRC1P26715 233 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 CACNB1Q02641 598 aaPredicted RBP15.7■□□□□ 0.1
LIG1-202ENST00000427526 ADAM9Q13443 819 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 EDRF1Q3B7T1 1238 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 DPY19L2P1Q6NXN4 242 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 CRYGNQ8WXF5 182 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 TBC1D5Q92609 795 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 UIMC1Q96RL1 719 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 GMLQ99445 158 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 GLT8D2Q9H1C3 349 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 PITPNM2Q9BZ72 1349 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 MYH4Q9Y623 1939 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 A0A087X0T9 212 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 PALMO75781 387 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 FAM228BP0C875 321 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 PSEN1P49768 467 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 SNAP25P60880 206 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 TMEM179Q6ZVK1 233 aa15.7■□□□□ 0.1
LIG1-202ENST00000427526 F5H6K3 240 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 KLRC3Q07444 240 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 SPIRE1Q08AE8 756 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 QRICH1Q2TAL8 776 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 MEI1Q5TIA1 1274 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 C8orf74Q6P047 294 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 PPP4R3CPQ6ZMV5 832 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 TSEN2Q8NCE0 465 aaKnown RBP15.69■□□□□ 0.1
LIG1-202ENST00000427526 FAM76AQ8TAV0 307 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 ATRNL1Q5VV63 1379 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms