RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 GFRA4Q9GZZ7 299 aa-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 VPS16Q9H269 839 aa-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 ZNF408Q9H9D4 720 aa-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 NGRNQ9NPE2 291 aaKnown RBP-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 TUBA8Q9NY65 449 aaPredicted RBP-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 ANKFY1Q9P2R3 1169 aa-0.47□□□□□ -2.48
RNU4-88P-201ENST00000411220 LACTBL1A8MY62 500 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 MGST3O14880 152 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 LPXNO60711 386 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 CD1AP06126 327 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 MYF6P23409 242 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 BRD2P25440 801 aaKnown RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 HOXD9P28356 352 aaPredicted RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 CDKN2AP42771 156 aaKnown RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 ATP1A2P50993 1020 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF157P51786 506 aaPredicted RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 RPL36AP83881 106 aaKnown RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 SLC10A2Q12908 348 aaPredicted RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 MPP3Q13368 585 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 RABEP1Q15276 862 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 SPINK14Q6IE38 97 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 MIB1Q86YT6 1006 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 RNF141Q8WVD5 230 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 DOCK7Q96N67 2140 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 TCF12Q99081 682 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 GNL3Q9BVP2 549 aaKnown RBP eCLIP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 CDADC1Q9BWV3 514 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 GPR87Q9BY21 358 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 SEMA4CQ9C0C4 833 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 SLC17A6Q9P2U8 582 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 PTPN22Q9Y2R2 807 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 NR2E1Q9Y466 385 aa-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 RBM19Q9Y4C8 960 aaKnown RBP-0.48□□□□□ -2.49
RNU4-88P-201ENST00000411220 PRAMEF27A3QJZ7 478 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 CDKL5O76039 1030 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF888P0CJ79 500 aaPredicted RBP-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 PRB4P10163 310 aaPredicted RBP-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 KRT13P13646 458 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 ITPKAP23677 461 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZAP70P43403 619 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 FXR1P51114 621 aaKnown RBP eCLIP-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 BLOC1S1P78537 153 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 GRM1Q13255 1194 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 NMIQ13287 307 aaPredicted RBP-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 NCOA4Q13772 614 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 HLA-DQA1Q5Y7H0 255 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 ABLIM2Q6H8Q1 611 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 TMEM52Q8NDY8 209 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 ELMO3Q96BJ8 720 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 MIEF2Q96C03 454 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 MYEOVQ96EZ4 313 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 WNT10AQ9GZT5 417 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 KATNBL1Q9H079 304 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 MBD2Q9UBB5 411 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 AFG3L2Q9Y4W6 797 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 NFS1Q9Y697 457 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 USP24Q9UPU5 2620 aa-0.49□□□□□ -2.49
RNU4-88P-201ENST00000411220 MPLP40238 635 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 LMO4P61968 165 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 ETF1P62495 437 aaKnown RBP-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZXDBP98169 803 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 PI16Q6UXB8 463 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 DNAJC14Q6Y2X3 702 aaPredicted RBP-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 Q6ZVH6 145 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 P3H3Q8IVL6 736 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 ARHGEF19Q8IW93 802 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 TMEM176AQ96HP8 235 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 HES6Q96HZ4 224 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 LIN7BQ9HAP6 207 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 ASB6Q9NWX5 421 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 CACNA2D2Q9NY47 1150 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 PUF60Q9UHX1 559 aaKnown RBP-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 USH2AO75445 5202 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 TTC3P53804 2025 aa-0.5□□□□□ -2.49
RNU4-88P-201ENST00000411220 RYR1P21817 5038 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 IGKV6-21A0A0C4DH24 114 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 B4E1Z4 1266 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 NKX3-2P78367 333 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 DLK1P80370 383 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 EXOSC10Q01780 885 aaKnown RBP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 BFSP2Q13515 415 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 SCN5AQ14524 2016 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 NOLC1Q14978 699 aaKnown RBP eCLIP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 TWIST1Q15672 202 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZMAT1Q5H9K5 638 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 RPS26P11Q5JNZ5 115 aaPredicted RBP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 COX20Q5RI15 118 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF398Q8TD17 642 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 ARMC5Q96C12 935 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 VCPIP1Q96JH7 1222 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 MEIS3Q99687 375 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 DPH2Q9BQC3 489 aaPredicted RBP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZPBPQ9BS86 351 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 FAM120CQ9NX05 1096 aaKnown RBP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 WBP11Q9Y2W2 641 aaKnown RBP-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 SH3BP1Q9Y3L3 701 aa-0.51□□□□□ -2.49
RNU4-88P-201ENST00000411220 HERC2O95714 4834 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 TRIP12Q14669 1992 aaPredicted RBP-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 UBR4Q5T4S7 5183 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 ARID3CA6NKF2 412 aa-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms