RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 POTEDQ86YR6 584 aa9.69□□□□□ -0.86
RNU4-88P-201ENST00000411220 AEBP2Q6ZN18 517 aaPredicted RBP8.61□□□□□ -1.03
RNU4-88P-201ENST00000411220 CHIC1Q5VXU3 224 aa8.09□□□□□ -1.11
RNU4-88P-201ENST00000411220 SENP3Q9H4L4 574 aaPredicted RBP7.65□□□□□ -1.18
RNU4-88P-201ENST00000411220 MSH5O43196 834 aa7.42□□□□□ -1.22
RNU4-88P-201ENST00000411220 POTEHQ6S545 545 aa7.32□□□□□ -1.24
RNU4-88P-201ENST00000411220 PHF23Q9BUL5 403 aaPredicted RBP7.3□□□□□ -1.24
RNU4-88P-201ENST00000411220 FOXD1Q16676 465 aa7.26□□□□□ -1.25
RNU4-88P-201ENST00000411220 CACNB1Q02641 598 aaPredicted RBP7.25□□□□□ -1.25
RNU4-88P-201ENST00000411220 PLSCR2Q9NRY7 297 aa6.69□□□□□ -1.34
RNU4-88P-201ENST00000411220 PIAS4Q8N2W9 510 aaPredicted RBP6.46□□□□□ -1.38
RNU4-88P-201ENST00000411220 SP7Q8TDD2 431 aaPredicted RBP6.17□□□□□ -1.42
RNU4-88P-201ENST00000411220 RNF39Q9H2S5 420 aa6.16□□□□□ -1.42
RNU4-88P-201ENST00000411220 C1QBPQ07021 282 aaKnown RBP6.01□□□□□ -1.45
RNU4-88P-201ENST00000411220 DMRT2Q9Y5R5 561 aa5.81□□□□□ -1.48
RNU4-88P-201ENST00000411220 LHX8Q68G74 356 aa5.77□□□□□ -1.49
RNU4-88P-201ENST00000411220 DCAF8L1A6NGE4 600 aa5.68□□□□□ -1.5
RNU4-88P-201ENST00000411220 PPP6R1Q9UPN7 881 aa5.64□□□□□ -1.51
RNU4-88P-201ENST00000411220 CHRDL2Q6WN34 429 aa5.56□□□□□ -1.52
RNU4-88P-201ENST00000411220 ADRA2BP18089 450 aa5.55□□□□□ -1.52
RNU4-88P-201ENST00000411220 PCDH10Q9P2E7 1040 aa5.54□□□□□ -1.52
RNU4-88P-201ENST00000411220 POTEMA6NI47 508 aa5.53□□□□□ -1.52
RNU4-88P-201ENST00000411220 MAPK8IP2Q13387 824 aaPredicted RBP5.52□□□□□ -1.53
RNU4-88P-201ENST00000411220 POTEGQ6S5H5 508 aa5.45□□□□□ -1.54
RNU4-88P-201ENST00000411220 HAX1O00165 279 aa5.43□□□□□ -1.54
RNU4-88P-201ENST00000411220 DSG3P32926 999 aa5.27□□□□□ -1.57
RNU4-88P-201ENST00000411220 EVX2Q03828 476 aa5.18□□□□□ -1.58
RNU4-88P-201ENST00000411220 DNAJC5BQ9UF47 199 aa5.16□□□□□ -1.58
RNU4-88P-201ENST00000411220 SCAF1Q9H7N4 1312 aaKnown RBP5.15□□□□□ -1.59
RNU4-88P-201ENST00000411220 RBM42Q9BTD8 480 aaKnown RBP5.13□□□□□ -1.59
RNU4-88P-201ENST00000411220 PIP4P2Q8N4L2 257 aa5.09□□□□□ -1.59
RNU4-88P-201ENST00000411220 GABBR2O75899 941 aa5.02□□□□□ -1.61
RNU4-88P-201ENST00000411220 HOXD11P31277 338 aaPredicted RBP5.02□□□□□ -1.61
RNU4-88P-201ENST00000411220 OTUD5Q96G74 571 aa4.98□□□□□ -1.61
RNU4-88P-201ENST00000411220 CAPN15O75808 1086 aa4.97□□□□□ -1.61
RNU4-88P-201ENST00000411220 MMRN1Q13201 1228 aa4.94□□□□□ -1.62
RNU4-88P-201ENST00000411220 CDAN1Q8IWY9 1227 aa4.9□□□□□ -1.63
RNU4-88P-201ENST00000411220 POTEIP0CG38 1075 aa4.88□□□□□ -1.63
RNU4-88P-201ENST00000411220 SPINK5Q9NQ38 1064 aaPredicted RBP4.88□□□□□ -1.63
RNU4-88P-201ENST00000411220 LCE2DQ5TA82 110 aaPredicted RBP4.84□□□□□ -1.63
RNU4-88P-201ENST00000411220 FXR2P51116 673 aaKnown RBP eCLIP4.82□□□□□ -1.64
RNU4-88P-201ENST00000411220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.8□□□□□ -1.64
RNU4-88P-201ENST00000411220 PLPPR3Q6T4P5 718 aa4.79□□□□□ -1.64
RNU4-88P-201ENST00000411220 SPNS2Q8IVW8 549 aa4.77□□□□□ -1.65
RNU4-88P-201ENST00000411220 FAM163AQ96GL9 167 aaPredicted RBP4.76□□□□□ -1.65
RNU4-88P-201ENST00000411220 C19orf67A6NJJ6 358 aa4.72□□□□□ -1.65
RNU4-88P-201ENST00000411220 ABCB7O75027 752 aa4.7□□□□□ -1.66
RNU4-88P-201ENST00000411220 POTEB2H3BUK9 544 aa4.68□□□□□ -1.66
RNU4-88P-201ENST00000411220 AKT1S1Q96B36 256 aa4.66□□□□□ -1.66
RNU4-88P-201ENST00000411220 REM2Q8IYK8 340 aaPredicted RBP4.61□□□□□ -1.67
RNU4-88P-201ENST00000411220 DCBLD2Q96PD2 775 aa4.61□□□□□ -1.67
RNU4-88P-201ENST00000411220 RNF216Q9NWF9 866 aaPredicted RBP4.6□□□□□ -1.67
RNU4-88P-201ENST00000411220 PITPNM1O00562 1244 aa4.57□□□□□ -1.68
RNU4-88P-201ENST00000411220 LOC100996750A0A140TA64 210 aa4.56□□□□□ -1.68
RNU4-88P-201ENST00000411220 KRTAP4-6Q9BYQ5 205 aa4.56□□□□□ -1.68
RNU4-88P-201ENST00000411220 TRHP20396 242 aaPredicted RBP4.54□□□□□ -1.68
RNU4-88P-201ENST00000411220 U3KPZ7 1027 aaPredicted RBP4.51□□□□□ -1.69
RNU4-88P-201ENST00000411220 ZNF219Q9P2Y4 722 aaPredicted RBP4.5□□□□□ -1.69
RNU4-88P-201ENST00000411220 CLCN6P51797 869 aa4.49□□□□□ -1.69
RNU4-88P-201ENST00000411220 MAMSTRQ6ZN01 415 aa4.48□□□□□ -1.69
RNU4-88P-201ENST00000411220 PRKAR2AP13861 404 aaKnown RBP4.45□□□□□ -1.7
RNU4-88P-201ENST00000411220 POTEJP0CG39 1038 aa4.36□□□□□ -1.71
RNU4-88P-201ENST00000411220 SCUBE2Q9NQ36 999 aa4.36□□□□□ -1.71
RNU4-88P-201ENST00000411220 APLP2Q06481 763 aa4.31□□□□□ -1.72
RNU4-88P-201ENST00000411220 ST18O60284 1047 aa4.26□□□□□ -1.73
RNU4-88P-201ENST00000411220 CNKSR2Q8WXI2 1034 aa4.26□□□□□ -1.73
RNU4-88P-201ENST00000411220 CD44P16070 742 aaKnown RBP4.23□□□□□ -1.73
RNU4-88P-201ENST00000411220 METRNQ9UJH8 293 aa4.2□□□□□ -1.74
RNU4-88P-201ENST00000411220 RNF166Q96A37 237 aaPredicted RBP4.18□□□□□ -1.74
RNU4-88P-201ENST00000411220 PELP1Q8IZL8 1130 aaKnown RBP4.15□□□□□ -1.75
RNU4-88P-201ENST00000411220 TMEM121BQ9BXQ6 578 aaPredicted RBP4.14□□□□□ -1.75
RNU4-88P-201ENST00000411220 KRTAP3-3Q9BYR6 98 aa4.14□□□□□ -1.75
RNU4-88P-201ENST00000411220 KRTAP3-2Q9BYR7 98 aa4.14□□□□□ -1.75
RNU4-88P-201ENST00000411220 C7P10643 843 aa4.13□□□□□ -1.75
RNU4-88P-201ENST00000411220 GALR2O43603 387 aaPredicted RBP4.12□□□□□ -1.75
RNU4-88P-201ENST00000411220 SLC39A7Q92504 469 aa4.11□□□□□ -1.75
RNU4-88P-201ENST00000411220 ZNF579Q8NAF0 562 aaKnown RBP4.09□□□□□ -1.75
RNU4-88P-201ENST00000411220 IRX2Q9BZI1 471 aaPredicted RBP4.08□□□□□ -1.76
RNU4-88P-201ENST00000411220 POLA2Q14181 598 aa4.07□□□□□ -1.76
RNU4-88P-201ENST00000411220 CHADLQ6NUI6 762 aa4.06□□□□□ -1.76
RNU4-88P-201ENST00000411220 MARVELD3Q96A59 401 aa4.03□□□□□ -1.76
RNU4-88P-201ENST00000411220 CLEC11AQ9Y240 323 aa4.02□□□□□ -1.77
RNU4-88P-201ENST00000411220 OSCARQ8IYS5 282 aa4□□□□□ -1.77
RNU4-88P-201ENST00000411220 PLA2G2EQ9NZK7 142 aa3.99□□□□□ -1.77
RNU4-88P-201ENST00000411220 MYT1LQ9UL68 1186 aa3.99□□□□□ -1.77
RNU4-88P-201ENST00000411220 PPP4R3CPQ6ZMV5 832 aa3.98□□□□□ -1.77
RNU4-88P-201ENST00000411220 SPDYE1Q8NFV5 336 aaPredicted RBP3.96□□□□□ -1.78
RNU4-88P-201ENST00000411220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.94□□□□□ -1.78
RNU4-88P-201ENST00000411220 HNRNPUL2Q1KMD3 747 aaKnown RBP3.94□□□□□ -1.78
RNU4-88P-201ENST00000411220 ASTLQ6HA08 431 aaPredicted RBP3.94□□□□□ -1.78
RNU4-88P-201ENST00000411220 SUZ12Q15022 739 aaKnown RBP3.93□□□□□ -1.78
RNU4-88P-201ENST00000411220 SLAIN1Q8ND83 568 aa3.93□□□□□ -1.78
RNU4-88P-201ENST00000411220 ZRANB1Q9UGI0 708 aa3.93□□□□□ -1.78
RNU4-88P-201ENST00000411220 KRTAP1-3Q8IUG1 177 aa3.92□□□□□ -1.78
RNU4-88P-201ENST00000411220 ZBTB12Q9Y330 459 aaPredicted RBP3.92□□□□□ -1.78
RNU4-88P-201ENST00000411220 HS3ST6Q96QI5 342 aa3.91□□□□□ -1.78
RNU4-88P-201ENST00000411220 KRTAP4-8Q9BYQ9 185 aa3.91□□□□□ -1.78
RNU4-88P-201ENST00000411220 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.9□□□□□ -1.79
RNU4-88P-201ENST00000411220 EMP3P54852 163 aa3.9□□□□□ -1.79
RNU4-88P-201ENST00000411220 Q6ZNB5 142 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms