RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 PTK7Q13308 1070 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 ORC2Q13416 577 aaPredicted RBP12.31□□□□□ -0.44
CHMP3-205ENST00000409810 EARS2Q5JPH6 523 aaKnown RBP12.31□□□□□ -0.44
CHMP3-205ENST00000409810 PDXDC2PQ6P474 469 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 ABHD15Q6UXT9 468 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 NOSTRINQ8IVI9 506 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 RETREG2Q8NC44 543 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 ETNPPLQ8TBG4 499 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 PPP1R13LQ8WUF5 828 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 ATP6V0A1Q93050 837 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 UIMC1Q96RL1 719 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 NOC4LQ9BVI4 516 aaKnown RBP12.31□□□□□ -0.44
CHMP3-205ENST00000409810 KCNMB3Q9NPA1 279 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 DISC1Q9NRI5 854 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 TRPC6Q9Y210 931 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 COLQQ9Y215 455 aaPredicted RBP12.31□□□□□ -0.44
CHMP3-205ENST00000409810 TELO2Q9Y4R8 837 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 EVPLQ92817 2033 aa12.31□□□□□ -0.44
CHMP3-205ENST00000409810 SCN5AQ14524 2016 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 IGKV6D-21A0A0A0MT36 114 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 FAM205CA6NFA0 338 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RRN3P2A6NIE6 340 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 CHMP2AO43633 222 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 NEMFO60524 1076 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 PSMD10O75832 226 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 PARNO95453 639 aaKnown RBP12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RPLP2P05387 115 aaKnown RBP12.3□□□□□ -0.44
CHMP3-205ENST00000409810 PDCP20941 246 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 ITGB8P26012 769 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 HOXC8P31273 242 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RFC2P35250 354 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 CALCRLQ16602 461 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 MCTP1Q6DN14 999 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 MIER3Q7Z3K6 550 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 POTEDQ86YR6 584 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 CCDC60Q8IWA6 550 aaPredicted RBP12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RPUSD2Q8IZ73 545 aaKnown RBP12.3□□□□□ -0.44
CHMP3-205ENST00000409810 TDHQ8IZJ6 230 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 INTS4Q96HW7 963 aaKnown RBP12.3□□□□□ -0.44
CHMP3-205ENST00000409810 FAM167AQ96KS9 214 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 PCYT2Q99447 389 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 PRO3102Q9H379 93 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 UNC45AQ9H3U1 944 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RNPEPQ9H4A4 650 aa12.3□□□□□ -0.44
CHMP3-205ENST00000409810 RANBP2P49792 3224 aaKnown RBP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 POTEB3A0JP26 581 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 HBP1O60381 514 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 CAND2O75155 1236 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 PFKMP08237 780 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 U2AF2P26368 475 aaKnown RBP eCLIP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 CYP2C18P33260 490 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 RBL2Q08999 1139 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 PPP2R5CQ13362 524 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 PLCB4Q15147 1175 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 GRIK4Q16099 956 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 LARP1BQ659C4 914 aaKnown RBP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 SWSAP1Q6NVH7 229 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 TAF2Q6P1X5 1199 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 PSRC1Q6PGN9 363 aaPredicted RBP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 POTEBQ6S5H4 581 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 CKAP2LQ8IYA6 745 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 ATP8B4Q8TF62 1192 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 LMBR1Q8WVP7 490 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 BBXQ8WY36 941 aaPredicted RBP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 SETD4Q9NVD3 440 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 GABBR1Q9UBS5 961 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 TUBE1Q9UJT0 475 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 CEP131Q9UPN4 1083 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 MAFBQ9Y5Q3 323 aaPredicted RBP12.29□□□□□ -0.44
CHMP3-205ENST00000409810 IGSF9BQ9UPX0 1349 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 COL1A2P08123 1366 aa12.29□□□□□ -0.44
CHMP3-205ENST00000409810 KIF28PB7ZC32 967 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 TREHO43280 583 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 DKC1O60832 514 aaKnown RBP eCLIP12.28□□□□□ -0.44
CHMP3-205ENST00000409810 HSP90AA1P07900 732 aaKnown RBP12.28□□□□□ -0.44
CHMP3-205ENST00000409810 INSRRP14616 1297 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 SELPP16109 830 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 ATP2B1P20020 1258 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 MCM7P33993 719 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 CCL23P55773 120 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 IGBP1P78318 339 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 ZNF200P98182 395 aaPredicted RBP12.28□□□□□ -0.44
CHMP3-205ENST00000409810 TTC38Q5R3I4 469 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 LRRC8DQ7L1W4 858 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 RSPH3Q86UC2 560 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 SERINC5Q86VE9 423 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 GJA10Q969M2 543 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 WNT8AQ9H1J5 351 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 MTIF3Q9H2K0 278 aaKnown RBP12.28□□□□□ -0.44
CHMP3-205ENST00000409810 IL23AQ9NPF7 189 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 TET1Q8NFU7 2136 aa12.28□□□□□ -0.44
CHMP3-205ENST00000409810 IQCF3P0C7M6 154 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 CKBP12277 381 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 CSF2RAP15509 400 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 RILPL1Q5EBL4 403 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 ZNF484Q5JVG2 852 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 B3GNT9Q6UX72 402 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 DHX38Q92620 1227 aaKnown RBP12.27□□□□□ -0.45
CHMP3-205ENST00000409810 HAS1Q92839 578 aa12.27□□□□□ -0.45
CHMP3-205ENST00000409810 CTAGE1Q96RT6 745 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms