RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 TELO2Q9Y4R8 837 aa12.4□□□□□ -0.42
CSPG4P1Y-201ENST00000306641 MKI67P46013 3256 aaKnown RBP12.4□□□□□ -0.42
CSPG4P1Y-201ENST00000306641 SCN5AQ14524 2016 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 H0YGN5 161 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ATG7O95352 703 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PPFIA1Q13136 1202 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PPP2R5CQ13362 524 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ZNF174Q15697 407 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TMEM266Q2M3C6 531 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PRPF38BQ5VTL8 546 aaKnown RBP12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 NCAPH2Q6IBW4 605 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 GDF6Q6KF10 455 aaPredicted RBP12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ABHD15Q6UXT9 468 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PLPPR4Q7Z2D5 763 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 CCDC60Q8IWA6 550 aaPredicted RBP12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 AFAP1L1Q8TED9 768 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ATP6V0A1Q93050 837 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 GJA10Q969M2 543 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TRPV6Q9H1D0 765 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 HIPK3Q9H422 1215 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 GABBR1Q9UBS5 961 aa12.39□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 NRCAMQ92823 1304 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 IGSF9BQ9UPX0 1349 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 IGKV6D-21A0A0A0MT36 114 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 KIAA0355O15063 1070 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 STX6O43752 255 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 DKC1O60832 514 aaKnown RBP eCLIP12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 OR52Z1P0C646 297 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PDIA4P13667 645 aaKnown RBP12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SYT1P21579 422 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SWSAP1Q6NVH7 229 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SH3RF1Q7Z6J0 888 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SPRYD3Q8NCJ5 442 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 FAM167AQ96KS9 214 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PCYT2Q99447 389 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PPP1R12CQ9BZL4 782 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TBX21Q9UL17 535 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PCDHA12Q9UN75 941 aa12.38□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 POTEB3A0JP26 581 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TRIM43BA6NCK2 446 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 RRN3P2A6NIE6 340 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 WNT7AO00755 349 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 HBP1O60381 514 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 CYP2C9P11712 490 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TXKP42681 527 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 IGBP1P78318 339 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 MDM2Q00987 491 aaPredicted RBP12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 BFSP2Q13515 415 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 NBR1Q14596 966 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PLCB4Q15147 1175 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 GRIK4Q16099 956 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 POTEBQ6S5H4 581 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 FERMT3Q86UX7 667 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 RETREG2Q8NC44 543 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 CAGE1Q8TC20 777 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ATP8B4Q8TF62 1192 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 HAS1Q92839 578 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TRIM43Q96BQ3 446 aaPredicted RBP12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 RAB34Q9BZG1 259 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 RNPEPQ9H4A4 650 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TTC12Q9H892 705 aaPredicted RBP12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SETD4Q9NVD3 440 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 VAV3Q9UKW4 847 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 CEP131Q9UPN4 1083 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 COL1A2P08123 1366 aa12.37□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 LAD1O00515 517 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TIMP1P01033 207 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 OATP04181 439 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 MAGEA10P43363 369 aaPredicted RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PRKCEQ02156 737 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PTK7Q13308 1070 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TRMT1LQ7Z2T5 733 aaKnown RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TMEM199Q8N511 208 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ERMNQ8TAM6 284 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 LMBR1Q8WVP7 490 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 BBXQ8WY36 941 aaPredicted RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 BADQ92934 168 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 NOC4LQ9BVI4 516 aaKnown RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TMEM60Q9H2L4 133 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ZSCAN16Q9H4T2 348 aaPredicted RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TUBE1Q9UJT0 475 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PCDHB6Q9Y5E3 794 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 MAFBQ9Y5Q3 323 aaPredicted RBP12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 SIP14410 1827 aa12.36□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PITPNM1O00562 1244 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TREHO43280 583 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 BMP15O95972 392 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 INSRRP14616 1297 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 HOXC8P31273 242 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PSMC5P62195 406 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 ZNF200P98182 395 aaPredicted RBP12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 FPGSQ05932 587 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 PPIGQ13427 754 aaKnown RBP eCLIP12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 EPHA7Q15375 998 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 MFSD5Q6N075 450 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 TAF2Q6P1X5 1199 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 B3GNT9Q6UX72 402 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 RSPH3Q86UC2 560 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 BANK1Q8NDB2 785 aa12.35□□□□□ -0.43
CSPG4P1Y-201ENST00000306641 NEK9Q8TD19 979 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms