RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	HAT2	P39984	401 aa		3.79	□□□□□ -1.8
RET3	YPL010W	VMA13	P41807	478 aa	Known RBP	3.79	□□□□□ -1.8
RET3	YPL010W	PSA1	P41940	361 aa	Known RBP	3.79	□□□□□ -1.8
RET3	YPL010W	RET2	P43621	546 aa		3.79	□□□□□ -1.8
RET3	YPL010W	JHD2	P47156	728 aa	Predicted RBP	3.79	□□□□□ -1.8
RET3	YPL010W	OCA1	P50946	238 aa	Predicted RBP	3.79	□□□□□ -1.8
RET3	YPL010W	LCL3	P53153	274 aa		3.79	□□□□□ -1.8
RET3	YPL010W	YGR015C	P53208	328 aa		3.79	□□□□□ -1.8
RET3	YPL010W	HOL1	P53389	586 aa		3.79	□□□□□ -1.8
RET3	YPL010W	SPP2	Q02521	185 aa		3.79	□□□□□ -1.8
RET3	YPL010W	NHP10	Q03435	203 aa		3.79	□□□□□ -1.8
RET3	YPL010W	YMR114C	Q04471	368 aa	Known RBP	3.79	□□□□□ -1.8
RET3	YPL010W	ROY1	Q04847	553 aa		3.79	□□□□□ -1.8
RET3	YPL010W	YPS7	Q06325	596 aa		3.79	□□□□□ -1.8
RET3	YPL010W	PRS5	Q12265	496 aa	Known RBP	3.79	□□□□□ -1.8
RET3	YPL010W	RMD5	Q12508	421 aa		3.79	□□□□□ -1.8
RET3	YPL010W	STE2	D6VTK4	431 aa		3.78	□□□□□ -1.8
RET3	YPL010W	TEF1	P02994	458 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	PEP5	P12868	1029 aa		3.78	□□□□□ -1.8
RET3	YPL010W	PRP16	P15938	1071 aa	Predicted RBP	3.78	□□□□□ -1.8
RET3	YPL010W	PHO3	P24031	467 aa		3.78	□□□□□ -1.8
RET3	YPL010W	MGT1	P26188	188 aa		3.78	□□□□□ -1.8
RET3	YPL010W	FAA1	P30624	700 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	BEM3	P32873	1128 aa		3.78	□□□□□ -1.8
RET3	YPL010W	RMA1	P36001	430 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	EBP2	P36049	427 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	SOL2	P37262	315 aa		3.78	□□□□□ -1.8
RET3	YPL010W	RRN10	P38204	145 aa		3.78	□□□□□ -1.8
RET3	YPL010W	MSG5	P38590	489 aa		3.78	□□□□□ -1.8
RET3	YPL010W	MNN1	P39106	762 aa		3.78	□□□□□ -1.8
RET3	YPL010W	PRP39	P39682	629 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	EFM4	P40516	257 aa		3.78	□□□□□ -1.8
RET3	YPL010W	YNL260C	P53846	198 aa		3.78	□□□□□ -1.8
RET3	YPL010W	ERG13	P54839	491 aa	Known RBP	3.78	□□□□□ -1.8
RET3	YPL010W	YPL068C	Q02749	293 aa		3.78	□□□□□ -1.8
RET3	YPL010W	STP4	Q07351	490 aa		3.78	□□□□□ -1.8
RET3	YPL010W	YOL159C	Q08300	171 aa		3.78	□□□□□ -1.8
RET3	YPL010W	SLD7	Q08457	257 aa		3.78	□□□□□ -1.8
RET3	YPL010W	AIM41	Q12032	185 aa		3.78	□□□□□ -1.8
RET3	YPL010W	REX3	Q12090	404 aa		3.78	□□□□□ -1.8
RET3	YPL010W	CDC21	P06785	304 aa		3.77	□□□□□ -1.81
RET3	YPL010W	SSA3	P09435	649 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	RPB4	P20433	221 aa	Predicted RBP	3.77	□□□□□ -1.81
RET3	YPL010W	CHA1	P25379	360 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	SPS22	P25380	463 aa		3.77	□□□□□ -1.81
RET3	YPL010W	MGR1	P25573	417 aa		3.77	□□□□□ -1.81
RET3	YPL010W	CNE1	P27825	502 aa		3.77	□□□□□ -1.81
RET3	YPL010W	PRE4	P30657	266 aa		3.77	□□□□□ -1.81
RET3	YPL010W	PCH2	P38126	564 aa		3.77	□□□□□ -1.81
RET3	YPL010W	IFA38	P38286	347 aa		3.77	□□□□□ -1.81
RET3	YPL010W	VHC1	P38329	1120 aa		3.77	□□□□□ -1.81
RET3	YPL010W	GGC1	P38988	300 aa		3.77	□□□□□ -1.81
RET3	YPL010W	NPT1	P39683	429 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	FRT2	P39734	528 aa		3.77	□□□□□ -1.81
RET3	YPL010W	VPS52	P39904	641 aa		3.77	□□□□□ -1.81
RET3	YPL010W	YER034W	P40022	185 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	APQ12	P40532	138 aa		3.77	□□□□□ -1.81
RET3	YPL010W	BOL2	P53082	120 aa		3.77	□□□□□ -1.81
RET3	YPL010W	CLD1	P53264	445 aa		3.77	□□□□□ -1.81
RET3	YPL010W	BSC5	P53755	489 aa		3.77	□□□□□ -1.81
RET3	YPL010W	EFR3	Q03653	782 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	ORM2	Q06144	216 aa		3.77	□□□□□ -1.81
RET3	YPL010W	NOP6	Q07623	225 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	CUE5	Q08412	411 aa	Known RBP	3.77	□□□□□ -1.81
RET3	YPL010W	APL4	Q12028	832 aa		3.77	□□□□□ -1.81
RET3	YPL010W	YOR097C	Q12274	175 aa	Predicted RBP	3.77	□□□□□ -1.81
RET3	YPL010W	RRP42	Q12277	265 aa	Predicted RBP	3.77	□□□□□ -1.81
RET3	YPL010W	PST1	Q12355	444 aa		3.77	□□□□□ -1.81
RET3	YPL010W	SRN2	Q99176	213 aa		3.77	□□□□□ -1.81
RET3	YPL010W	STE3	P06783	470 aa		3.76	□□□□□ -1.81
RET3	YPL010W	PHO2	P07269	559 aa		3.76	□□□□□ -1.81
RET3	YPL010W	GPA2	P10823	449 aa		3.76	□□□□□ -1.81
RET3	YPL010W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.76	□□□□□ -1.81	not detected
RET3	YPL010W	GLK1	P17709	500 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	TRX2	P22803	104 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	URA7	P28274	579 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	RPS27A	P35997	82 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	KKQ8	P36004	724 aa		3.76	□□□□□ -1.81
RET3	YPL010W	RRP14	P36080	434 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	YBR062C	P38239	180 aa		3.76	□□□□□ -1.81
RET3	YPL010W	APD1	P38281	316 aa		3.76	□□□□□ -1.81
RET3	YPL010W	RPS27B	P38711	82 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YHI9	P38765	294 aa		3.76	□□□□□ -1.81
RET3	YPL010W	SEC28	P40509	296 aa	Known RBP	3.76	□□□□□ -1.81
RET3	YPL010W	MAD2	P40958	196 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YFL012W	P43580	148 aa		3.76	□□□□□ -1.81
RET3	YPL010W	PMT4	P46971	762 aa		3.76	□□□□□ -1.81
RET3	YPL010W	BPL1	P48445	690 aa	Predicted RBP	3.76	□□□□□ -1.81
RET3	YPL010W	YIP4	P53093	235 aa		3.76	□□□□□ -1.81
RET3	YPL010W	AAT1	Q01802	451 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YSA1	Q01976	231 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YDR541C	Q03049	344 aa		3.76	□□□□□ -1.81
RET3	YPL010W	TDA9	Q04545	1251 aa		3.76	□□□□□ -1.81
RET3	YPL010W	CDC123	Q05791	360 aa		3.76	□□□□□ -1.81
RET3	YPL010W	BOP2	Q06150	570 aa		3.76	□□□□□ -1.81
RET3	YPL010W	MMT2	Q08970	484 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YPR022C	Q12139	1133 aa		3.76	□□□□□ -1.81
RET3	YPL010W	COX17	Q12287	69 aa		3.76	□□□□□ -1.81
RET3	YPL010W	YOR032W-A	Q8TGS1	66 aa		3.76	□□□□□ -1.81
RET3	YPL010W	RPS17A	P02407	136 aa	Known RBP	3.75	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms