RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W MRPL15P36523 253 aa5.8□□□□□ -1.48
CAF40YNL288W GDT1P38301 280 aaPredicted RBP5.8□□□□□ -1.48
CAF40YNL288W YER158CP40095 573 aa5.8□□□□□ -1.48
CAF40YNL288W FMP32P43557 207 aa5.8□□□□□ -1.48
CAF40YNL288W ARC35P53731 342 aaKnown RBP5.8□□□□□ -1.48
CAF40YNL288W GOR1P53839 350 aa5.8□□□□□ -1.48
CAF40YNL288W SED5Q01590 340 aa5.8□□□□□ -1.48
CAF40YNL288W FAR10Q06001 478 aa5.8□□□□□ -1.48
CAF40YNL288W REX4Q08237 289 aa5.8□□□□□ -1.48
CAF40YNL288W RRP40Q08285 240 aaKnown RBP5.8□□□□□ -1.48
CAF40YNL288W NSL1Q12143 216 aa5.8□□□□□ -1.48
CAF40YNL288W RPN5Q12250 445 aaKnown RBP5.8□□□□□ -1.48
CAF40YNL288W NTO1Q12311 748 aa5.8□□□□□ -1.48
CAF40YNL288W JLP1Q12358 412 aa5.8□□□□□ -1.48
CAF40YNL288W RPL11BQ3E757 174 aaPredicted RBP5.8□□□□□ -1.48
CAF40YNL288W YIL046W-AQ3E7Z4 54 aa5.8□□□□□ -1.48
CAF40YNL288W CYC1P00044 109 aaPredicted RBP5.79□□□□□ -1.48
CAF40YNL288W RAS2P01120 322 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W LEU4P06208 619 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W STE7P06784 515 aa5.79□□□□□ -1.48
CAF40YNL288W KAR1P11927 433 aa5.79□□□□□ -1.48
CAF40YNL288W YCR006CP25350 157 aa5.79□□□□□ -1.48
CAF40YNL288W MGR1P25573 417 aa5.79□□□□□ -1.48
CAF40YNL288W IMG1P25626 169 aa5.79□□□□□ -1.48
CAF40YNL288W ATO2P32907 282 aa5.79□□□□□ -1.48
CAF40YNL288W YKL107WP34251 309 aa5.79□□□□□ -1.48
CAF40YNL288W GLG1P36143 616 aa5.79□□□□□ -1.48
CAF40YNL288W UBS1P38290 277 aa5.79□□□□□ -1.48
CAF40YNL288W ATG7P38862 630 aa5.79□□□□□ -1.48
CAF40YNL288W MNL1P38888 796 aa5.79□□□□□ -1.48
CAF40YNL288W VRG4P40107 337 aa5.79□□□□□ -1.48
CAF40YNL288W IAH1P41734 238 aa5.79□□□□□ -1.48
CAF40YNL288W PSA1P41940 361 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W PRM10P42946 383 aa5.79□□□□□ -1.48
CAF40YNL288W PTR3P43606 678 aa5.79□□□□□ -1.48
CAF40YNL288W ALK1P43633 760 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W TMA22P47089 198 aaPredicted RBP5.79□□□□□ -1.48
CAF40YNL288W IBA57P47158 497 aa5.79□□□□□ -1.48
CAF40YNL288W YPL071CQ02864 156 aa5.79□□□□□ -1.48
CAF40YNL288W MMT1Q03218 510 aa5.79□□□□□ -1.48
CAF40YNL288W EFR3Q03653 782 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W GTB1Q04924 702 aa5.79□□□□□ -1.48
CAF40YNL288W PDR8Q06149 701 aa5.79□□□□□ -1.48
CAF40YNL288W BOP2Q06150 570 aa5.79□□□□□ -1.48
CAF40YNL288W DIA2Q08496 732 aaPredicted RBP5.79□□□□□ -1.48
CAF40YNL288W SLF1Q12034 447 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W RIB2Q12362 591 aaKnown RBP5.79□□□□□ -1.48
CAF40YNL288W ATP4P05626 244 aa5.78□□□□□ -1.48
CAF40YNL288W PHO81P17442 1178 aa5.78□□□□□ -1.48
CAF40YNL288W STE4P18851 423 aa5.78□□□□□ -1.48
CAF40YNL288W PRI2P20457 528 aa5.78□□□□□ -1.48
CAF40YNL288W RVS161P25343 265 aaKnown RBP5.78□□□□□ -1.48
CAF40YNL288W TAH1P25638 111 aaPredicted RBP5.78□□□□□ -1.48
CAF40YNL288W CSM1P25651 190 aa5.78□□□□□ -1.48
CAF40YNL288W SUI1P32911 108 aaKnown RBP5.78□□□□□ -1.48
CAF40YNL288W OAR1P35731 278 aa5.78□□□□□ -1.48
CAF40YNL288W COS111P38308 924 aa5.78□□□□□ -1.48
CAF40YNL288W TSC10P38342 320 aa5.78□□□□□ -1.48
CAF40YNL288W MTG2P38860 518 aa5.78□□□□□ -1.48
CAF40YNL288W PRP39P39682 629 aaKnown RBP5.78□□□□□ -1.48
CAF40YNL288W YIL086CP40503 102 aa5.78□□□□□ -1.48
CAF40YNL288W YIL001WP40560 513 aa5.78□□□□□ -1.48
CAF40YNL288W PAC11P40960 533 aa5.78□□□□□ -1.48
CAF40YNL288W GUS1P46655 708 aaKnown RBP RIP-Chip data5.78□□□□□ -1.48not detected
CAF40YNL288W USE1P53146 245 aa5.78□□□□□ -1.48
CAF40YNL288W YET2Q04210 160 aa5.78□□□□□ -1.48
CAF40YNL288W SPC24Q04477 213 aa5.78□□□□□ -1.48
CAF40YNL288W SWF1Q04629 336 aa5.78□□□□□ -1.48
CAF40YNL288W GGA1Q06336 557 aa5.78□□□□□ -1.48
CAF40YNL288W VPS74Q06385 345 aa5.78□□□□□ -1.48
CAF40YNL288W MCH5Q08777 521 aa5.78□□□□□ -1.48
CAF40YNL288W YPR064WQ12492 139 aa5.78□□□□□ -1.48
CAF40YNL288W POL2P21951 2222 aaKnown RBP5.77□□□□□ -1.49
CAF40YNL288W SOD2P00447 233 aa5.77□□□□□ -1.49
CAF40YNL288W RPS13P05756 151 aaKnown RBP5.77□□□□□ -1.49
CAF40YNL288W TPK2P06245 380 aa5.77□□□□□ -1.49
CAF40YNL288W BCY1P07278 416 aaKnown RBP5.77□□□□□ -1.49
CAF40YNL288W RAP1P11938 827 aa5.77□□□□□ -1.49
CAF40YNL288W CBS2P14905 389 aa5.77□□□□□ -1.49
CAF40YNL288W GFD2P25370 566 aaKnown RBP5.77□□□□□ -1.49
CAF40YNL288W BNA4P38169 460 aa5.77□□□□□ -1.49
CAF40YNL288W SPG5P42933 373 aa5.77□□□□□ -1.49
CAF40YNL288W ASK10P48361 1146 aa5.77□□□□□ -1.49
CAF40YNL288W RAD17P48581 401 aa5.77□□□□□ -1.49
CAF40YNL288W MUP1P50276 574 aa5.77□□□□□ -1.49
CAF40YNL288W BIO3P50277 480 aa5.77□□□□□ -1.49
CAF40YNL288W MIG2P53035 382 aa5.77□□□□□ -1.49
CAF40YNL288W ROG1P53118 685 aa5.77□□□□□ -1.49
CAF40YNL288W GTR1Q00582 310 aa5.77□□□□□ -1.49
CAF40YNL288W GAD1Q04792 585 aa5.77□□□□□ -1.49
CAF40YNL288W VID22Q05934 901 aa5.77□□□□□ -1.49
CAF40YNL288W PSR1Q07800 427 aa5.77□□□□□ -1.49
CAF40YNL288W GUP2Q08929 609 aa5.77□□□□□ -1.49
CAF40YNL288W MMT2Q08970 484 aa5.77□□□□□ -1.49
CAF40YNL288W SEN1Q00416 2231 aaKnown RBP5.76□□□□□ -1.49
CAF40YNL288W YPR096CO13587 100 aa5.76□□□□□ -1.49
CAF40YNL288W ATP6P00854 259 aa5.76□□□□□ -1.49
CAF40YNL288W COR1P07256 457 aa5.76□□□□□ -1.49
CAF40YNL288W MSS116P15424 664 aaKnown RBP5.76□□□□□ -1.49
CAF40YNL288W CCA1P21269 546 aa5.76□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 45.9 ms