RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	RAD52	P06778	471 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	CDC21	P06785	304 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	CAR2	P07991	424 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	MAS1	P10507	462 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	MER1	P16523	270 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	TYR1	P20049	452 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	MGR1	P25573	417 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YCL068C	P25593	260 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	DOA4	P32571	926 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YKL023W	P36103	277 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	STP2	P38704	541 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	CCT2	P39076	527 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	YMR124W	P39523	943 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	BDH2	P39713	417 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	ERV46	P39727	415 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	SCC4	P40090	624 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	GAT2	P40209	560 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	SYG1	P40528	902 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	PAC11	P40960	533 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	PHO86	P46956	311 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	VOA1	P53262	265 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	ATG38	Q05789	226 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	RRG8	Q06109	277 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	NSE1	Q07913	336 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YOR365C	Q08844	703 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	RPL7B	Q12213	244 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	SPO24	Q3E752	67 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	MES1	P00958	751 aa	Known RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	GAS1	P22146	559 aa	Known RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	MRPL25	P23369	157 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	MEK1	P24719	497 aa	Predicted RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	EMP70	P32802	667 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	MSN4	P33749	630 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ROT2	P38138	954 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	PEX32	P38292	413 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	INM1	P38710	295 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ATM1	P40416	690 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	SAS2	P40963	338 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ECL1	P48235	211 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ASN1	P49089	572 aa	Known RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	SMM1	P53720	384 aa	Known RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	SNU56	Q03782	492 aa	Known RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	PDR8	Q06149	701 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ARR1	Q06596	294 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	MRPL35	Q06678	367 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	ADF1	Q2V2Q1	113 aa		4.17	□□□□□ -1.74
SOF1	YLL011W	BRR1	Q99177	341 aa	Predicted RBP	4.17	□□□□□ -1.74
SOF1	YLL011W	RSR1	P13856	272 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	PMA2	P19657	947 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	YPS1	P32329	569 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	REC114	P32841	428 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	RGT1	P32862	1170 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
SOF1	YLL011W	UBA4	P38820	440 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	AIM10	P39965	576 aa	Known RBP	4.16	□□□□□ -1.74
SOF1	YLL011W	ALD5	P40047	520 aa	Known RBP	4.16	□□□□□ -1.74
SOF1	YLL011W	TOS3	P43637	560 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	YJR011C	P47086	261 aa	Predicted RBP	4.16	□□□□□ -1.74
SOF1	YLL011W	YNL134C	P53912	376 aa	Known RBP	4.16	□□□□□ -1.74
SOF1	YLL011W	SHR3	Q02774	210 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	HSP31	Q04432	237 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	YLR173W	Q06247	608 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	CDA2	Q06703	312 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	GEP3	Q08622	556 aa		4.16	□□□□□ -1.74
SOF1	YLL011W	DCP1	Q12517	231 aa	Predicted RBP	4.16	□□□□□ -1.74
SOF1	YLL011W	PSK1	P31374	1356 aa		4.15	□□□□□ -1.74
SOF1	YLL011W	CHS1	P08004	1131 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	PRB1	P09232	635 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	RPB4	P20433	221 aa	Predicted RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	FUN19	P28003	413 aa	Predicted RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	MSS51	P32335	436 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	CYS4	P32582	507 aa	Known RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	SPR1	P32603	445 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	RAD23	P32628	398 aa	Known RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	BUD2	P33314	1104 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	RTT107	P38850	1070 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	PRP39	P39682	629 aa	Known RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	EXO1	P39875	702 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	YIL060W	P40519	144 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	SNL1	P40548	159 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	BNA3	P47039	444 aa	Known RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	YIF1	P53845	314 aa	Known RBP	4.15	□□□□□ -1.75
SOF1	YLL011W	YNL050C	P53952	270 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	ASI1	P54074	624 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	YMR102C	Q03177	834 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	YMR206W	Q03695	313 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	BOP2	Q06150	570 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	YOL073C	Q08232	322 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	RUP1	Q12242	671 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	GLE1	Q12315	538 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	RMD5	Q12508	421 aa		4.15	□□□□□ -1.75
SOF1	YLL011W	YPT1	P01123	206 aa	Known RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	PEP5	P12868	1029 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	SAR1	P20606	190 aa	Known RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	RPI1	P23250	407 aa	Known RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	FRE1	P32791	686 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	SPG5	P42933	373 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	GCN20	P43535	752 aa	Known RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	RAD17	P48581	401 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	ECM7	Q06200	448 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 63.1 ms