RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	UTP18	P40362	594 aa	Predicted RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	MSS2	P40990	351 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	IME4	P41833	600 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	STB2	P46679	850 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SIP4	P46954	829 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	ESF2	P53743	316 aa	Known RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	FRE4	P53746	719 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	ASI1	P54074	624 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SED5	Q01590	340 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	MET31	Q03081	177 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	MMT1	Q03218	510 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	MTQ2	Q03920	221 aa	Predicted RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	YDR124W	Q04608	324 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SWA2	Q06677	668 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	RSA1	Q08932	381 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SNF8	Q12483	233 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	YOR338W	Q99326	363 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	CBP2	P03874	630 aa	Predicted RBP	5.77	□□□□□ -1.49
RPN11	YFR004W	RAP1	P11938	827 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	KSS1	P14681	368 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	PPH21	P23594	369 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	ITR2	P30606	609 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	RIB7	P33312	244 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	MAE1	P36013	669 aa	Known RBP	5.77	□□□□□ -1.49
RPN11	YFR004W	BAP2	P38084	609 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	ALG3	P38179	458 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	FTH1	P38310	465 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	CCT6	P39079	546 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	AYR1	P40471	297 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	GAT1	P43574	510 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	TY4A-J	P47023	414 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	RBL2	P48606	106 aa	Known RBP	5.77	□□□□□ -1.49
RPN11	YFR004W	SPC105	P53148	917 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	RSN1	Q03516	953 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	EMI1	Q04406	187 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	RSC3	Q06639	885 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	YOL073C	Q08232	322 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	YPR071W	Q12346	211 aa		5.77	□□□□□ -1.49
RPN11	YFR004W	PHO5	P00635	467 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	CLB3	P24870	427 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	PCL2	P25693	308 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	AAR2	P32357	355 aa	Predicted RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	MEI5	P32489	222 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	ATO2	P32907	282 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	AFR1	P33304	620 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	PRP18	P33411	251 aa	Predicted RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	TIP20	P33891	701 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	UTP11	P34247	250 aa	Predicted RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	TPO5	P36029	618 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	NTR2	P36118	322 aa	Predicted RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	FES1	P38260	290 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	GOS1	P38736	223 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	TIM17	P39515	158 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YGR054W	P53235	642 aa	Known RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	YNR068C	P53754	272 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YMR265C	Q03508	461 aa	Known RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	EFR3	Q03653	782 aa	Known RBP	5.76	□□□□□ -1.49
RPN11	YFR004W	ECM11	Q04110	302 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	FMP42	Q04991	504 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	NDL1	Q06568	189 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	RAD34	Q06665	692 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YLL007C	Q07799	665 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YPL191C	Q08930	360 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	VPS68	Q12016	184 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	MLH3	Q12083	715 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YLL054C	Q12244	843 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	PST1	Q12355	444 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	YOL159C-A	Q3E769	90 aa		5.76	□□□□□ -1.49
RPN11	YFR004W	MET17	P06106	444 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	MRP13	P12686	339 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	DAP2	P18962	818 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	RPA135	P22138	1203 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	UBA1	P22515	1024 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	SEC17	P32602	292 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	YKL100C	P34248	587 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	PCL5	P38794	229 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	LRP1	P38801	184 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	EGD2	P38879	174 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	EMP65	P40085	556 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	LAS21	P40367	830 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	CUZ1	P53899	274 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	IDP3	P53982	420 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	YKR005C	Q02203	525 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	APC4	Q04601	652 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	PUS7	Q08647	676 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	YPL245W	Q12179	454 aa	Known RBP	5.75	□□□□□ -1.49
RPN11	YFR004W	FRE7	Q12333	620 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	MHF2	Q3E829	80 aa		5.75	□□□□□ -1.49
RPN11	YFR004W	RPP1A	P05318	106 aa	Predicted RBP	5.74	□□□□□ -1.49
RPN11	YFR004W	TPK3	P05986	398 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	YAR066W	P0CX18	203 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	YHR214W	P0CX19	203 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	UNG1	P12887	359 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	SCL1	P21243	252 aa	Known RBP	5.74	□□□□□ -1.49
RPN11	YFR004W	SGV1	P23293	657 aa	Known RBP	5.74	□□□□□ -1.49
RPN11	YFR004W	CRM1	P30822	1084 aa	Known RBP	5.74	□□□□□ -1.49
RPN11	YFR004W	ATP11	P32453	318 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	APE2	P32454	952 aa	Known RBP	5.74	□□□□□ -1.49
RPN11	YFR004W	NUP2	P32499	720 aa		5.74	□□□□□ -1.49
RPN11	YFR004W	SPC29	P33419	253 aa		5.74	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms