RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	PRP21	P32524	280 aa	Predicted RBP	5.8	□□□□□ -1.48
RPT3	YDR394W	VPS21	P36017	210 aa	Known RBP	5.8	□□□□□ -1.48
RPT3	YDR394W	NTR2	P36118	322 aa	Predicted RBP	5.8	□□□□□ -1.48
RPT3	YDR394W	GMH1	P36125	273 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	FES1	P38260	290 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	COS111	P38308	924 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	RCK1	P38622	512 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	YLF2	P38746	405 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	APE4	P38821	490 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	DOT6	P40059	670 aa	Known RBP	5.8	□□□□□ -1.48
RPT3	YDR394W	MRPS18	P42847	217 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	VEL1	P53058	206 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	EMC4	P53073	190 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	SLD3	P53135	668 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	ARE2	P53629	642 aa	Known RBP	5.8	□□□□□ -1.48
RPT3	YDR394W	IGO1	P53897	168 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	COG5	P53951	403 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	MET31	Q03081	177 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	TLG1	Q03322	224 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	TMN2	Q04562	672 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	YDL114W	Q07530	308 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	TRM8	Q12009	286 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	YDL199C	Q12407	687 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	MHF1	Q3E835	90 aa		5.8	□□□□□ -1.48
RPT3	YDR394W	HIP1	P06775	603 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	KAR1	P11927	433 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	UNG1	P12887	359 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	RFA2	P26754	273 aa	Known RBP	5.79	□□□□□ -1.48
RPT3	YDR394W	HXT4	P32467	576 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	SEC17	P32602	292 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	NPL6	P32832	435 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	SPO23	P33757	523 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	PMT1	P33775	817 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	HCS1	P34243	683 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	MGE1	P38523	228 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	YHR127W	P38833	243 aa	Known RBP	5.79	□□□□□ -1.48
RPT3	YDR394W	ATG7	P38862	630 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	AXL2	P38928	823 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	HXT6	P39003	570 aa	Known RBP	5.79	□□□□□ -1.48
RPT3	YDR394W	HXT7	P39004	570 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	AVT6	P40074	448 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	NDE1	P40215	560 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	GYP8	P43570	497 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	SPR28	Q04921	423 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	RRT8	Q08219	342 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	ATG29	Q12092	213 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	TAO3	P40468	2376 aa		5.79	□□□□□ -1.48
RPT3	YDR394W	SIR1	P21691	654 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	GAS1	P22146	559 aa	Known RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	YSR3	P23501	404 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	GRR1	P24814	1151 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	RAD51	P25454	400 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	EMC3	P36039	253 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	ARA1	P38115	344 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	INM1	P38710	295 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	YPT35	P38815	214 aa	Known RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	CCT6	P39079	546 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	PCF11	P39081	626 aa	Predicted RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	KRE29	P40026	464 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	ARF3	P40994	183 aa	RIP-Chip data	5.78	□□□□□ -1.48	not detected
RPT3	YDR394W	GNP1	P48813	663 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	ESF2	P53743	316 aa	Known RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	ARX1	Q03862	593 aa	Known RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	MUS81	Q04149	632 aa	Predicted RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	ARP10	Q04549	284 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	ARG7	Q04728	441 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	GAL83	Q04739	417 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	ARR1	Q06596	294 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	MCM21	Q06675	368 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	CDA2	Q06703	312 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	RGT2	Q12300	763 aa		5.78	□□□□□ -1.48
RPT3	YDR394W	PDH1	Q12428	516 aa	Known RBP	5.78	□□□□□ -1.48
RPT3	YDR394W	FUM1	P08417	488 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-LR1	P0C2J4	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-F	P0CX61	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-GR2	P0CX62	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	FPR1	P20081	114 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-C	P25383	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	NUP2	P32499	720 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	CAT2	P32796	670 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	TPO5	P36029	618 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	YPK3	P38070	525 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	ALG3	P38179	458 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	IPT1	P38954	527 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	SOP4	P39543	234 aa	Predicted RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	GIM4	P40005	111 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	LSM5	P40089	93 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	OSW5	P40219	148 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	MPM1	P40364	252 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	PFA3	P42836	336 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	YJL043W	P47053	257 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	MUP1	P50276	574 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	COG7	P53195	279 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	IMP4	P53941	290 aa	Known RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	YPL071C	Q02864	156 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-DR2	Q03483	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	RRP17	Q04031	235 aa	Predicted RBP	5.77	□□□□□ -1.49
RPT3	YDR394W	YDL177C	Q12257	170 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-B	Q12260	438 aa		5.77	□□□□□ -1.49
RPT3	YDR394W	TY2A-OR2	Q12293	438 aa		5.77	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms