RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CYP2J2P51589 502 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 MRPL12P52815 198 aaKnown RBP12.02□□□□□ -0.48
CLN3-244ENST00000636147 DR1Q01658 176 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 BIRC2Q13490 618 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 ARMC9Q7Z3E5 817 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 CADPS2Q86UW7 1296 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 IRF2BP1Q8IU81 584 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 UBL4BQ8N7F7 174 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 MAGEF1Q9HAY2 307 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 SERPINA10Q9UK55 444 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 EPHB6O15197 1021 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 CSF1RP07333 972 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 EEF2P13639 858 aaKnown RBP12.02□□□□□ -0.49
CLN3-244ENST00000636147 MXRA7P84157 204 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 PLCB3Q01970 1234 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 LRRC63Q05C16 580 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 FAM47EQ6ZV65 393 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 UNC13DQ70J99 1090 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 SPATA20Q8TB22 786 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 RAPGEF5Q92565 580 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 DONSONQ9NYP3 566 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 NOP53Q9NZM5 478 aaKnown RBP12.02□□□□□ -0.49
CLN3-244ENST00000636147 CEP72Q9P209 647 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 RASGRF2O14827 1237 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 MECOMQ03112 1051 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 SNX1Q13596 522 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 DIXDC1Q155Q3 683 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 PPP4R3AQ6IN85 833 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 CNPY4Q8N129 248 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 NSMCE1Q8WV22 266 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 ERGIC2Q96RQ1 377 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 RIC8AQ9NPQ8 531 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 EMILIN3Q9NT22 766 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 DDX20Q9UHI6 824 aaKnown RBP12.02□□□□□ -0.49
CLN3-244ENST00000636147 HDAC9Q9UKV0 1011 aa12.02□□□□□ -0.49
CLN3-244ENST00000636147 LAD1O00515 517 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 KCNH2Q12809 1159 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 UBE2SQ16763 222 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 SWT1Q5T5J6 900 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 ZNF622Q969S3 477 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-244ENST00000636147 MTRQ99707 1265 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 DUSP9Q99956 384 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 CNOT10Q9H9A5 744 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 FAM205AQ6ZU69 1335 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 CNTNAP5Q8WYK1 1306 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 MYMKA6NI61 221 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 SMIM24O75264 130 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 GNA14O95837 355 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 CHN1P15882 459 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 ALDH3A1P30838 453 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 GBP1P32455 592 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 SCTRP47872 440 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 TRIP13Q15645 432 aaPredicted RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 KLHDC7AQ5VTJ3 777 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 NAIF1Q69YI7 327 aaPredicted RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 PLVAPQ9BX97 442 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 CCSER1Q9C0I3 900 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 L3MBTL1Q9Y468 752 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 AGLP35573 1532 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 PDHA1P08559 390 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 KRT15P19012 456 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 NBPF9Q3BBW0 867 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 GNPTABQ3T906 1256 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 PRPF38AQ8NAV1 312 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 USP38Q8NB14 1042 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 NOD2Q9HC29 1040 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 DCP1AQ9NPI6 582 aaPredicted RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 DDX25Q9UHL0 483 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 TPX2Q9ULW0 747 aaKnown RBP12.01□□□□□ -0.49
CLN3-244ENST00000636147 PCDHA6Q9UN73 950 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 DNM3Q9UQ16 869 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 PCDHA8Q9Y5H6 950 aa12.01□□□□□ -0.49
CLN3-244ENST00000636147 E9PMD0 336 aa12□□□□□ -0.49
CLN3-244ENST00000636147 OPLAHO14841 1288 aa12□□□□□ -0.49
CLN3-244ENST00000636147 ADAMTS2O95450 1211 aa12□□□□□ -0.49
CLN3-244ENST00000636147 TDP2O95551 362 aa12□□□□□ -0.49
CLN3-244ENST00000636147 RCAN1P53805 252 aa12□□□□□ -0.49
CLN3-244ENST00000636147 ZNF449Q6P9G9 518 aa12□□□□□ -0.49
CLN3-244ENST00000636147 MYCT1Q8N699 235 aa12□□□□□ -0.49
CLN3-244ENST00000636147 ATP8A2Q9NTI2 1148 aa12□□□□□ -0.49
CLN3-244ENST00000636147 WDR17Q8IZU2 1322 aa12□□□□□ -0.49
CLN3-244ENST00000636147 GCFC2P16383 781 aaKnown RBP12□□□□□ -0.49
CLN3-244ENST00000636147 CETN2P41208 172 aa12□□□□□ -0.49
CLN3-244ENST00000636147 SLC18A3Q16572 532 aa12□□□□□ -0.49
CLN3-244ENST00000636147 ANKS1AQ92625 1134 aa12□□□□□ -0.49
CLN3-244ENST00000636147 XPO6Q96QU8 1125 aaKnown RBP12□□□□□ -0.49
CLN3-244ENST00000636147 PRMT1Q99873 361 aaKnown RBP12□□□□□ -0.49
CLN3-244ENST00000636147 BUD13Q9BRD0 619 aaKnown RBP eCLIP12□□□□□ -0.493e-6■□□□□ 10.1
CLN3-244ENST00000636147 SPATA31D1Q6ZQQ2 1576 aa12□□□□□ -0.49
CLN3-244ENST00000636147 SFI1A8K8P3 1242 aa12□□□□□ -0.49
CLN3-244ENST00000636147 CCDC188H7C350 402 aa12□□□□□ -0.49
CLN3-244ENST00000636147 MUM1Q2TAK8 710 aa12□□□□□ -0.49
CLN3-244ENST00000636147 GALNT17Q6IS24 598 aa12□□□□□ -0.49
CLN3-244ENST00000636147 GUF1Q8N442 669 aaKnown RBP12□□□□□ -0.49
CLN3-244ENST00000636147 SAAL1Q96ER3 474 aa12□□□□□ -0.49
CLN3-244ENST00000636147 SEMA6BQ9H3T3 888 aa12□□□□□ -0.49
CLN3-244ENST00000636147 PKD2L1Q9P0L9 805 aa12□□□□□ -0.49
CLN3-244ENST00000636147 GCNT4Q9P109 453 aa12□□□□□ -0.49
CLN3-244ENST00000636147 FRMD4BQ9Y2L6 1034 aa12□□□□□ -0.49
CLN3-244ENST00000636147 ZNF263O14978 683 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms