RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SEC62Q99442 399 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 UPF3BQ9BZI7 483 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 SEMA6BQ9H3T3 888 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 RPAP3Q9H6T3 665 aaPredicted RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 CABP5Q9NP86 173 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 C11orf16Q9NQ32 467 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 PIH1D3Q9NQM4 214 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 PDRG1Q9NUG6 133 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 NOP53Q9NZM5 478 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 ZNF532Q9HCE3 1301 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 KBTBD13C9JR72 458 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 ZBTB39O15060 712 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 NID1P14543 1247 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 PDE6AP16499 860 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 GNAT2P19087 354 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 VCAM1P19320 739 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 USP14P54578 494 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 IMMTQ16891 758 aaKnown RBP11.94□□□□□ -0.5
SS18-221ENST00000582448 ABCB5Q2M3G0 1257 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 PRAMEF19Q5SWL8 479 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 ARRDC4Q8NCT1 418 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 MYLIPQ8WY64 445 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 FERMT2Q96AC1 680 aa11.94□□□□□ -0.5
SS18-221ENST00000582448 ZSCAN31Q96LW9 406 aaPredicted RBP11.94□□□□□ -0.5
SS18-221ENST00000582448 M0R2C6 588 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 MPHOSPH10O00566 681 aaKnown RBP11.93□□□□□ -0.5
SS18-221ENST00000582448 GPAA1O43292 621 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 XYLBO75191 536 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 IGHA1P01876 353 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 APPP05067 770 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 RARAP10276 462 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 HSPD1P10809 573 aaKnown RBP11.93□□□□□ -0.5
SS18-221ENST00000582448 FGD1P98174 961 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 GRB14Q14449 540 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 PLS1Q14651 629 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 TRIM60Q495X7 471 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 TATDN1Q6P1N9 297 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 DHX32Q7L7V1 743 aaKnown RBP11.93□□□□□ -0.5
SS18-221ENST00000582448 MAGEB6Q8N7X4 407 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 NUDT8Q8WV74 236 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 OSBP2Q969R2 916 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 C12orf42Q96LP6 360 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 SPOCK3Q9BQ16 436 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 ANP32EQ9BTT0 268 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 NACAP1Q9BZK3 213 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 LIMCH1Q9UPQ0 1083 aa11.93□□□□□ -0.5
SS18-221ENST00000582448 PROCP04070 461 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 POLR3DP05423 398 aaPredicted RBP11.92□□□□□ -0.5
SS18-221ENST00000582448 ADORA2AP29274 412 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 ADCYAP1R1P41586 468 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 TRIP4Q15650 581 aaPredicted RBP11.92□□□□□ -0.5
SS18-221ENST00000582448 TTC6Q86TZ1 520 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 NEK1Q96PY6 1258 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 MOV10L1Q9BXT6 1211 aaKnown RBP11.92□□□□□ -0.5
SS18-221ENST00000582448 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 STIM2Q9P246 746 aa11.92□□□□□ -0.5
SS18-221ENST00000582448 ZNF213O14771 459 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 HOXC6P09630 235 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 CYBAP13498 195 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 FOSL2P15408 326 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 ERCC3P19447 782 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 PLCD1P51178 756 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 AK2P54819 239 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 NUCB2P80303 420 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 TRDNQ13061 729 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 SEPT2Q15019 361 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 PSAPL1Q6NUJ1 521 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 NOL8Q76FK4 1167 aaKnown RBP11.91□□□□□ -0.5
SS18-221ENST00000582448 NCAPG2Q86XI2 1143 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 CHMP4CQ96CF2 233 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 INTS4Q96HW7 963 aaKnown RBP11.91□□□□□ -0.5
SS18-221ENST00000582448 TMX3Q96JJ7 454 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 TANGO6Q9C0B7 1094 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 PUS7LQ9H0K6 701 aaKnown RBP11.91□□□□□ -0.5
SS18-221ENST00000582448 SH2B1Q9NRF2 756 aaPredicted RBP11.91□□□□□ -0.5
SS18-221ENST00000582448 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.91□□□□□ -0.5
SS18-221ENST00000582448 UNC80Q8N2C7 3258 aa11.91□□□□□ -0.5
SS18-221ENST00000582448 TRIM43BA6NCK2 446 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 MSTNO14793 375 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 COBLO75128 1261 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 CHGBP05060 677 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 COG2Q14746 738 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 ADCK5Q3MIX3 580 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
SS18-221ENST00000582448 TRIM43Q96BQ3 446 aaPredicted RBP11.9□□□□□ -0.5
SS18-221ENST00000582448 SPATC1LQ9H0A9 340 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
SS18-221ENST00000582448 TTYH1Q9H313 450 aaPredicted RBP11.9□□□□□ -0.5
SS18-221ENST00000582448 SLC5A4Q9NY91 659 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 HOXC10Q9NYD6 342 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 SIPA1L1O43166 1804 aa11.9□□□□□ -0.5
SS18-221ENST00000582448 TCRBV5S4A2TA0A5A2 114 aa11.89□□□□□ -0.51
SS18-221ENST00000582448 PATL2C9JE40 543 aaKnown RBP11.89□□□□□ -0.51
SS18-221ENST00000582448 FAM229AH3BQW9 127 aa11.89□□□□□ -0.51
SS18-221ENST00000582448 SEPT4O43236 478 aa11.89□□□□□ -0.51
SS18-221ENST00000582448 STRNO43815 780 aa11.89□□□□□ -0.51
SS18-221ENST00000582448 MBD4O95243 580 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms