RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PIP5K1CO60331 668 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 KCNH1O95259 989 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 PHKG2P15735 406 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 FGFR3P22607 806 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 GRIK1P39086 918 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 HALP42357 657 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 PPM1FP49593 454 aaPredicted RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 DSG1Q02413 1049 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 ODF1Q14990 250 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 DBN1Q16643 649 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 INAVAQ3KP66 663 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 PPM1JQ5JR12 505 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 TMEM240Q5SV17 173 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 C1orf228Q6PIY5 440 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 USP53Q70EK8 1073 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 MAMDC2Q7Z304 686 aaPredicted RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 SKAP1Q86WV1 359 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 MCATQ8IVS2 390 aaKnown RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 KCTD13Q8WZ19 329 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 AHCYL2Q96HN2 611 aaKnown RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 HHIPL1Q96JK4 782 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 LPIN3Q9BQK8 851 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 CARD10Q9BWT7 1032 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 MKRN2Q9H000 416 aaKnown RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 SOX17Q9H6I2 414 aaPredicted RBP7.08□□□□□ -1.28
VPS53-219ENST00000576019 AS3MTQ9HBK9 375 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 MTMR10Q9NXD2 777 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 WHRNQ9P202 907 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 EMC9Q9Y3B6 208 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 TRPM7Q96QT4 1865 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 NSD3Q9BZ95 1437 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 SCN11AQ9UI33 1791 aa7.08□□□□□ -1.28
VPS53-219ENST00000576019 C4AP0C0L4 1744 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 C4BP0C0L5 1744 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 KIAA0100Q14667 2235 aaKnown RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 K7ESF4 209 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 CBX4O00257 560 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 DDNO94850 711 aaPredicted RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 LTFP02788 710 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 GFRA1P56159 465 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 CHAF1AQ13111 956 aaPredicted RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 STK3Q13188 491 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 KLF1Q13351 362 aaPredicted RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 PRSS53Q2L4Q9 553 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.07□□□□□ -1.28
VPS53-219ENST00000576019 NUTM2GQ5VZR2 741 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 ZNF787Q6DD87 383 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 XRRA1Q6P2D8 792 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 TOGARAM2Q6ZUX3 1019 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 DDX53Q86TM3 631 aaKnown RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 SMAP1Q8IYB5 467 aaPredicted RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 IFNL2Q8IZJ0 200 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 TMEM145Q8NBT3 493 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 GJA10Q969M2 543 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 TTC17Q96AE7 1141 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 CCDC74BQ96LY2 380 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 SLC12A5Q9H2X9 1139 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 EMC7Q9NPA0 242 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 THG1LQ9NWX6 298 aaKnown RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 ATXN7L1Q9ULK2 861 aaPredicted RBP7.07□□□□□ -1.28
VPS53-219ENST00000576019 INSRP06213 1382 aa7.07□□□□□ -1.28
VPS53-219ENST00000576019 H7C1W4 665 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 SLC26A4O43511 780 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 GAS7O60861 476 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 IL33O95760 270 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 SNRPB2P08579 225 aaKnown RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 ZNF280AP59817 542 aaPredicted RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 RBM10P98175 930 aaKnown RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 C19orf57Q0VDD7 668 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 GTF2H3Q13889 308 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 MAPRE1Q15691 268 aaKnown RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 KIF4BQ2VIQ3 1234 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 ZC3H12AQ5D1E8 599 aaKnown RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 GPR158Q5T848 1215 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 CST9Q5W186 159 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 GTF2IRD2BQ6EKJ0 949 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 FBXO46Q6PJ61 603 aaPredicted RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 POMZP3Q6PJE2 187 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 GTF2IRD2Q86UP8 949 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 C1orf162Q8NEQ5 155 aaPredicted RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 HSPBAP1Q96EW2 488 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 ORAI3Q9BRQ5 295 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 NGRNQ9NPE2 291 aaKnown RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 MAN1C1Q9NR34 630 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 SPTLC3Q9NUV7 552 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 STK26Q9P289 416 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 CGGBP1Q9UFW8 167 aaPredicted RBP7.06□□□□□ -1.28
VPS53-219ENST00000576019 PPP2R3BQ9Y5P8 575 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 CCDC7Q96M83 1385 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 MUC6Q6W4X9 2439 aa7.06□□□□□ -1.28
VPS53-219ENST00000576019 CACNA1BQ00975 2339 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 WDR64B1ANS9 1081 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 SHOXO15266 292 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 GCP02774 474 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 CD247P20963 164 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 HMGB2P26583 209 aaKnown RBP7.05□□□□□ -1.28
VPS53-219ENST00000576019 LSSP48449 732 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 ARL4DP49703 201 aa7.05□□□□□ -1.28
VPS53-219ENST00000576019 HNRNPUQ00839 825 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS53-219ENST00000576019 CTBSQ01459 385 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms