RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 LMBR1Q8WVP7 490 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 ANO2Q9NQ90 1003 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 SPDYE3A6NKU9 549 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 KCNA2P16389 499 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 RXRAP19793 462 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 TCF7P36402 384 aaPredicted RBP19.34■□□□□ 0.69
CLN3-231ENST00000568422 ARHGAP4P98171 946 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 TMTC3Q6ZXV5 915 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 RPAINQ86UA6 219 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 TRIM50Q86XT4 487 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 CMTR1Q8N1G2 835 aaKnown RBP19.34■□□□□ 0.69
CLN3-231ENST00000568422 SP7Q8TDD2 431 aaPredicted RBP19.34■□□□□ 0.69
CLN3-231ENST00000568422 GDPD5Q8WTR4 605 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 SEPT1Q8WYJ6 367 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 SAMD11Q96NU1 681 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 EHMT1Q9H9B1 1298 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 ERAP1Q9NZ08 941 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 MTUS1Q9ULD2 1270 aa19.34■□□□□ 0.69
CLN3-231ENST00000568422 COL4A6Q14031 1691 aa19.33■□□□□ 0.69
CLN3-231ENST00000568422 ITGB5P18084 799 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 KCNQ1P51787 676 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 SP4Q02446 784 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 MTMR1Q13613 665 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 BMP2KLQ5H9B9 411 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 TAF2Q6P1X5 1199 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 TOP1MTQ969P6 601 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 UBIAD1Q9Y5Z9 338 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 NLRC5Q86WI3 1866 aa19.33■□□□□ 0.68
CLN3-231ENST00000568422 ATP9AO75110 1047 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 RPLP2P05387 115 aaKnown RBP19.32■□□□□ 0.68
CLN3-231ENST00000568422 CTSHP09668 335 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 RSPH3Q86UC2 560 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 FBXO22Q8NEZ5 403 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 SMARCAD1Q9H4L7 1026 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 JADE2Q9NQC1 790 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 RBM28Q9NW13 759 aaKnown RBP19.32■□□□□ 0.68
CLN3-231ENST00000568422 PCDHA6Q9UN73 950 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 PCDHA8Q9Y5H6 950 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 RALGAPA2Q2PPJ7 1873 aa19.32■□□□□ 0.68
CLN3-231ENST00000568422 HEATR3Q7Z4Q2 680 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 MICU3Q86XE3 530 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 CCDC82Q8N4S0 544 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 TNPO1Q92973 898 aaKnown RBP19.31■□□□□ 0.68
CLN3-231ENST00000568422 NEK1Q96PY6 1258 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 YME1L1Q96TA2 773 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 IFIH1Q9BYX4 1025 aaKnown RBP19.31■□□□□ 0.68
CLN3-231ENST00000568422 TELO2Q9Y4R8 837 aa19.31■□□□□ 0.68
CLN3-231ENST00000568422 GSTTP1A0A1W2PQM5 241 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 hCG_1642624A0A1W2PR95 340 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 PPFIA1Q13136 1202 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 COL9A3Q14050 684 aaPredicted RBP19.3■□□□□ 0.68
CLN3-231ENST00000568422 UBE2SQ16763 222 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 APOA5Q6Q788 366 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 GLG1Q92896 1179 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 NECAB3Q96P71 396 aaPredicted RBP19.3■□□□□ 0.68
CLN3-231ENST00000568422 C17orf80Q9BSJ5 609 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 LRRC2Q9BYS8 371 aa19.3■□□□□ 0.68
CLN3-231ENST00000568422 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.29■□□□□ 0.68
CLN3-231ENST00000568422 MBLAC1A4D2B0 266 aaPredicted RBP19.29■□□□□ 0.68
CLN3-231ENST00000568422 hCG_1984214I3L0E3 225 aa19.29■□□□□ 0.68
CLN3-231ENST00000568422 FOSP01100 380 aaPredicted RBP19.29■□□□□ 0.68
CLN3-231ENST00000568422 PTPROQ16827 1216 aa19.29■□□□□ 0.68
CLN3-231ENST00000568422 TSGA10IPQ3SY00 556 aa19.29■□□□□ 0.68
CLN3-231ENST00000568422 PPP1R18Q6NYC8 613 aa19.29■□□□□ 0.68
CLN3-231ENST00000568422 ZNF713Q8N859 430 aaPredicted RBP19.29■□□□□ 0.68
CLN3-231ENST00000568422 MRPL38Q96DV4 380 aaKnown RBP19.29■□□□□ 0.68
CLN3-231ENST00000568422 TUBE1Q9UJT0 475 aa19.29■□□□□ 0.68
CLN3-231ENST00000568422 UPP2O95045 317 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 CHRNA1P02708 482 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 GRIK4Q16099 956 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 EPC2Q52LR7 807 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 DHX32Q7L7V1 743 aaKnown RBP19.28■□□□□ 0.68
CLN3-231ENST00000568422 RAB11FIP4Q86YS3 637 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 MXRA8Q9BRK3 442 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 C1QTNF1Q9BXJ1 281 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 OSBPL7Q9BZF2 842 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 GLT8D2Q9H1C3 349 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 JPH1Q9HDC5 661 aaPredicted RBP19.28■□□□□ 0.68
CLN3-231ENST00000568422 RIC8AQ9NPQ8 531 aa19.28■□□□□ 0.68
CLN3-231ENST00000568422 NFASCO94856 1347 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.27■□□□□ 0.68
CLN3-231ENST00000568422 RRN3P2A6NIE6 340 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 H3BNC9 293 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 ZBTB43O43298 467 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 COL9A1P20849 921 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 RCAN1P53805 252 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 EXOSC10Q01780 885 aaKnown RBP19.27■□□□□ 0.68
CLN3-231ENST00000568422 MGAT3Q09327 533 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 KRT32Q14532 448 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 RTN1Q16799 776 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 WWC2Q6AWC2 1192 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 RUFY4Q6ZNE9 571 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 CENPQQ7L2Z9 268 aaPredicted RBP19.27■□□□□ 0.68
CLN3-231ENST00000568422 SDF4Q9BRK5 362 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 AZI2Q9H6S1 392 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 KCNH7Q9NS40 1196 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 SLC9A2Q9UBY0 812 aa19.27■□□□□ 0.68
CLN3-231ENST00000568422 CNTNAP5Q8WYK1 1306 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 HMGB1P09429 215 aaKnown RBP19.26■□□□□ 0.67
CLN3-231ENST00000568422 MARK3P27448 753 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms