RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PLXNA3P51805 1871 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 NOP56O00567 594 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 LINC01565O15544 149 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 DHX16O60231 1041 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 SORBS3O60504 671 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 NDUFV1P49821 464 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 CAMK1Q14012 370 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 METTL7BQ6UX53 244 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 EFHBQ8N7U6 833 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 MTMR8Q96EF0 704 aa16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 ZNF215Q9UL58 517 aaPredicted RBP16.55■□□□□ 0.24
PRPF40A-211ENST00000493468 ZFHX2Q9C0A1 2572 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 SPTBN4Q9H254 2564 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 GFRA3O60609 400 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 STAM2O75886 525 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 ICAM3P32942 547 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 SIGLEC14Q08ET2 396 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 BTG3Q14201 252 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 GNPTABQ3T906 1256 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 ENAHQ8N8S7 591 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 LMBR1Q8WVP7 490 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 GPKOWQ92917 476 aaPredicted RBP eCLIP16.54■□□□□ 0.244e-6■■□□□ 11.8
PRPF40A-211ENST00000493468 IGFLR1Q9H665 355 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 SETD4Q9NVD3 440 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 CLEC1BQ9P126 229 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 PLAGL2Q9UPG8 496 aa16.54■□□□□ 0.24
PRPF40A-211ENST00000493468 FRMPD4Q14CM0 1322 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 NRCAMQ92823 1304 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 PLXNA4Q9HCM2 1894 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 DGKIO75912 1065 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 CHRNA1P02708 482 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 RRP1P56182 461 aaKnown RBP16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 MGAT3Q09327 533 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 NEDD9Q14511 834 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 TAF2Q6P1X5 1199 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 ZSCAN10Q96SZ4 725 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 GPR20Q99678 358 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 VAT1LQ9HCJ6 419 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 MYO15AQ9UKN7 3530 aa16.53■□□□□ 0.24
PRPF40A-211ENST00000493468 ENPP3O14638 875 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 ZNF213O14771 459 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 ZBTB5O15062 677 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 PPP1R11O60927 126 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 KDM4AO75164 1064 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 GHRP10912 638 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 HOXA13P31271 388 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 NUBP1P53384 320 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 MFAP1P55081 439 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 ARHGAP4P98171 946 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 TRAF1Q13077 416 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 NMIQ13287 307 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 LPIN1Q14693 890 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 CMTR2Q8IYT2 770 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 INPP4AQ96PE3 977 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 PHF7Q9BWX1 381 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 PCDHA1Q9Y5I3 950 aa16.52■□□□□ 0.24
PRPF40A-211ENST00000493468 TRIM6-TRIM34B2RNG4 842 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 GCOM1H8Y6P7 765 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 ITGB1P05556 798 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 POLR2MP0CAP2 368 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 ATF7P17544 494 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 DNAJB1P25685 340 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 PDE1AP54750 535 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 CRIPAKQ8N1N5 446 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 SPPL3Q8TCT6 385 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 ASIC4Q96FT7 647 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 BCAS3Q9H6U6 928 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 USP15Q9Y4E8 981 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 PCDHB15Q9Y5E8 787 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 MRPL42Q9Y6G3 142 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 LOXHD1Q8IVV2 1947 aa16.51■□□□□ 0.23
PRPF40A-211ENST00000493468 FSD2A1L4K1 749 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 SPATA31C2B4DYI2 1134 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 FIBPO43427 364 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 GLP2RO95838 553 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 TSHZ1Q6ZSZ6 1077 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 CYFIP1Q7L576 1253 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 ADGRD2Q7Z7M1 963 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 RSPH3Q86UC2 560 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 TRIM50Q86XT4 487 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 STAG2Q8N3U4 1231 aa16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 PTPRZ1P23471 2315 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-211ENST00000493468 B4E1Z4 1266 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 KLRF2D3W0D1 207 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 PROB1E7EW31 1015 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 RPLP2P05387 115 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 VCPP55072 806 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 MRPS9P82933 396 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 SEMA3FQ13275 785 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 FBXO47Q5MNV8 452 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 SENP7Q9BQF6 1050 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 ZSWIM5Q9P217 1185 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 ZBTB47Q9UFB7 747 aaPredicted RBP16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 BAZ2BQ9UIF8 2168 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 FAM186AA6NE01 2351 aa16.49■□□□□ 0.23
PRPF40A-211ENST00000493468 MBLAC1A4D2B0 266 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 CSPG5O95196 566 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 AVPR2P30518 371 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 NRIP1P48552 1158 aa16.48■□□□□ 0.23
PRPF40A-211ENST00000493468 RUFY4Q6ZNE9 571 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms