RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 GHRP10912 638 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 CCND2P30279 289 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 NDUFV1P49821 464 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 ZXDAP98168 799 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 ADGRD2Q7Z7M1 963 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 IQCA1Q86XH1 822 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 SMRP1Q8NCR6 262 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 ZSCAN10Q96SZ4 725 aaPredicted RBP21.38■■□□□ 1.01
SHH-205ENST00000472308 GPR20Q99678 358 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 EHMT1Q9H9B1 1298 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 MAP3K20Q9NYL2 800 aaKnown RBP21.38■■□□□ 1.01
SHH-205ENST00000472308 PLAGL2Q9UPG8 496 aa21.38■■□□□ 1.01
SHH-205ENST00000472308 PDE1AP54750 535 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 SEMA3FQ13275 785 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 LPIN1Q14693 890 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 CBX2Q14781 532 aaPredicted RBP21.37■■□□□ 1.01
SHH-205ENST00000472308 FBXL6Q8N531 539 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 PRRX2Q99811 253 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 PLVAPQ9BX97 442 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 USP26Q9BXU7 913 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 FAM86C1Q9NVL1 165 aa21.37■■□□□ 1.01
SHH-205ENST00000472308 B4E1Z4 1266 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 NOP56O00567 594 aaKnown RBP21.36■■□□□ 1.01
SHH-205ENST00000472308 ENPP3O14638 875 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 GNAT1P11488 350 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 RRP1P56182 461 aaKnown RBP21.36■■□□□ 1.01
SHH-205ENST00000472308 ARHGAP4P98171 946 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 MGAT3Q09327 533 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 BTG3Q14201 252 aaPredicted RBP21.36■■□□□ 1.01
SHH-205ENST00000472308 PKN1Q16512 942 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 SLC35G1Q2M3R5 365 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 CCDC178Q5BJE1 867 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 METTL7BQ6UX53 244 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 RUFY4Q6ZNE9 571 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 SUGP1Q8IWZ8 645 aaKnown RBP21.36■■□□□ 1.01
SHH-205ENST00000472308 PCDHA1Q9Y5I3 950 aa21.36■■□□□ 1.01
SHH-205ENST00000472308 MRPL42Q9Y6G3 142 aaKnown RBP21.36■■□□□ 1.01
SHH-205ENST00000472308 TRIM6-TRIM34B2RNG4 842 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 ZNF213O14771 459 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 DGKIO75912 1065 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 GLP2RO95838 553 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 VCPP55072 806 aaKnown RBP21.35■■□□□ 1.01
SHH-205ENST00000472308 MRPS9P82933 396 aaKnown RBP21.35■■□□□ 1.01
SHH-205ENST00000472308 COASYQ13057 564 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 CYFIP1Q7L576 1253 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 TICAM2Q86XR7 235 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 EFHBQ8N7U6 833 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 LINC01599Q8WXQ3 324 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 P2RX5Q93086 422 aa21.35■■□□□ 1.01
SHH-205ENST00000472308 INPP4AQ96PE3 977 aaPredicted RBP21.35■■□□□ 1.01
SHH-205ENST00000472308 TTC3P53804 2025 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 KIAA1671Q9BY89 1806 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 FRMPD4Q14CM0 1322 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 ZBTB5O15062 677 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 GFRA3O60609 400 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 ITGB1P05556 798 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 ICAM3P32942 547 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 NT5C2P49902 561 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 FCHSD1Q86WN1 690 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 CRIPAKQ8N1N5 446 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 SAMD3Q8N6K7 520 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 SPPL3Q8TCT6 385 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 ASIC4Q96FT7 647 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 ZSWIM5Q9P217 1185 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 USP15Q9Y4E8 981 aaPredicted RBP21.34■■□□□ 1.01
SHH-205ENST00000472308 DOCK5Q9H7D0 1870 aa21.34■■□□□ 1.01
SHH-205ENST00000472308 VPS13AQ96RL7 3174 aa21.33■■□□□ 1.01
SHH-205ENST00000472308 SPTBN4Q9H254 2564 aa21.33■■□□□ 1.01
SHH-205ENST00000472308 SPATA31C2B4DYI2 1134 aa21.33■■□□□ 1.01
SHH-205ENST00000472308 MAD2L2Q9UI95 211 aa21.33■■□□□ 1.01
SHH-205ENST00000472308 ZNF215Q9UL58 517 aaPredicted RBP21.33■■□□□ 1.01
SHH-205ENST00000472308 BARX2Q9UMQ3 279 aaPredicted RBP21.33■■□□□ 1.01
SHH-205ENST00000472308 PCDHGC5Q9Y5F6 944 aa21.33■■□□□ 1.01
SHH-205ENST00000472308 NRCAMQ92823 1304 aa21.32■■□□□ 1
SHH-205ENST00000472308 KLRF2D3W0D1 207 aa21.32■■□□□ 1
SHH-205ENST00000472308 GCOM1H8Y6P7 765 aaPredicted RBP21.32■■□□□ 1
SHH-205ENST00000472308 POLR2MP0CAP2 368 aa21.32■■□□□ 1
SHH-205ENST00000472308 NEDD9Q14511 834 aa21.32■■□□□ 1
SHH-205ENST00000472308 FBXO47Q5MNV8 452 aa21.32■■□□□ 1
SHH-205ENST00000472308 UTP14CQ5TAP6 766 aaKnown RBP21.32■■□□□ 1
SHH-205ENST00000472308 ANKRD45Q5TZF3 282 aa21.32■■□□□ 1
SHH-205ENST00000472308 DCHS1Q96JQ0 3298 aa21.32■■□□□ 1
SHH-205ENST00000472308 NRIP1P48552 1158 aa21.31■■□□□ 1
SHH-205ENST00000472308 SIGLEC14Q08ET2 396 aa21.31■■□□□ 1
SHH-205ENST00000472308 GNPTABQ3T906 1256 aa21.31■■□□□ 1
SHH-205ENST00000472308 TAF2Q6P1X5 1199 aa21.31■■□□□ 1
SHH-205ENST00000472308 KLHL23Q8NBE8 558 aa21.31■■□□□ 1
SHH-205ENST00000472308 PPP2R3CQ969Q6 453 aa21.31■■□□□ 1
SHH-205ENST00000472308 AGO3Q9H9G7 860 aaKnown RBP21.31■■□□□ 1
SHH-205ENST00000472308 PALM3A6NDB9 673 aaPredicted RBP21.3■■□□□ 1
SHH-205ENST00000472308 NAALADL2Q58DX5 795 aa21.3■■□□□ 1
SHH-205ENST00000472308 RBM23Q86U06 439 aaKnown RBP21.3■■□□□ 1
SHH-205ENST00000472308 HOMER1Q86YM7 354 aa21.3■■□□□ 1
SHH-205ENST00000472308 CMTR2Q8IYT2 770 aaKnown RBP21.3■■□□□ 1
SHH-205ENST00000472308 POF1BQ8WVV4 589 aa21.3■■□□□ 1
SHH-205ENST00000472308 PHF7Q9BWX1 381 aaPredicted RBP21.3■■□□□ 1
SHH-205ENST00000472308 RTEL1Q9NZ71 1219 aa21.3■■□□□ 1
SHH-205ENST00000472308 PLXNA3P51805 1871 aa21.29■■□□□ 1
SHH-205ENST00000472308 FIBPO43427 364 aa21.29■■□□□ 1
SHH-205ENST00000472308 RBM10P98175 930 aaKnown RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms