RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 LRRC2Q9BYS8 371 aa18.52■□□□□ 0.56
COL7A1-204ENST00000462475 SIP14410 1827 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.51■□□□□ 0.55
COL7A1-204ENST00000462475 KCNA2P16389 499 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 ITGB5P18084 799 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 TCF7P36402 384 aaPredicted RBP18.51■□□□□ 0.55
COL7A1-204ENST00000462475 CREB3L3Q68CJ9 461 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 GPRASP2Q96D09 838 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 ESYT1Q9BSJ8 1104 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 PSTPIP2Q9H939 334 aa18.51■□□□□ 0.55
COL7A1-204ENST00000462475 UPP2O95045 317 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 LIFRP42702 1097 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 FAM26DQ5JW98 314 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 RUFY4Q6ZNE9 571 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 TMTC3Q6ZXV5 915 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 TMTC2Q8N394 836 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 CCDC82Q8N4S0 544 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 GIMAP8Q8ND71 665 aaPredicted RBP18.5■□□□□ 0.55
COL7A1-204ENST00000462475 TOP1MTQ969P6 601 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 YME1L1Q96TA2 773 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 PKD2L1Q9P0L9 805 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 BRWD1Q9NSI6 2320 aa18.5■□□□□ 0.55
COL7A1-204ENST00000462475 NRCAMQ92823 1304 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 CALM1P0DP23 149 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 CALM2P0DP24 149 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 CALM3P0DP25 149 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 MARK3P27448 753 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 NECTIN1Q15223 517 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 EPC2Q52LR7 807 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 MICU3Q86XE3 530 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 IFIH1Q9BYX4 1025 aaKnown RBP18.49■□□□□ 0.55
COL7A1-204ENST00000462475 UBE2ZQ9H832 354 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-204ENST00000462475 UBIAD1Q9Y5Z9 338 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 SLC12A7Q9Y666 1083 aa18.49■□□□□ 0.55
COL7A1-204ENST00000462475 COL4A6Q14031 1691 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 GSTTP1A0A1W2PQM5 241 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 CHRNA1P02708 482 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 GHRP10912 638 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 PPFIA1Q13136 1202 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 MTMR1Q13613 665 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 APBB2Q92870 758 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 CDHR1Q96JP9 859 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 ANO2Q9NQ90 1003 aa18.48■□□□□ 0.55
COL7A1-204ENST00000462475 SPDYE3A6NKU9 549 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 MGAT3Q09327 533 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 GRIK4Q16099 956 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 TAF2Q6P1X5 1199 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 HEATR3Q7Z4Q2 680 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 FANCBQ8NB91 859 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 SEPT1Q8WYJ6 367 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 SAMD11Q96NU1 681 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 PCDHA6Q9UN73 950 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 PCDHA8Q9Y5H6 950 aa18.47■□□□□ 0.55
COL7A1-204ENST00000462475 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.46■□□□□ 0.55
COL7A1-204ENST00000462475 KCNA5P22460 613 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 WWC2Q6AWC2 1192 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 RPAINQ86UA6 219 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 SGMS1Q86VZ5 419 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 SKAP1Q86WV1 359 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 ZBTB10Q96DT7 871 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 MRPL38Q96DV4 380 aaKnown RBP18.46■□□□□ 0.55
COL7A1-204ENST00000462475 C1QTNF1Q9BXJ1 281 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 EPHX3Q9H6B9 360 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 EHMT1Q9H9B1 1298 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 JADE2Q9NQC1 790 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 ERAP1Q9NZ08 941 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 TUBE1Q9UJT0 475 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 CNTNAP5Q8WYK1 1306 aa18.46■□□□□ 0.55
COL7A1-204ENST00000462475 MBLAC1A4D2B0 266 aaPredicted RBP18.45■□□□□ 0.54
COL7A1-204ENST00000462475 GPM6BQ13491 265 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 LPIN1Q14693 890 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 MARCH8Q5T0T0 291 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 TYW1BQ6NUM6 668 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 TMEM192Q8IY95 271 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 GLG1Q92896 1179 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 KHSRPQ92945 711 aaKnown RBP eCLIP18.45■□□□□ 0.54
COL7A1-204ENST00000462475 PCYT2Q99447 389 aa18.45■□□□□ 0.54
COL7A1-204ENST00000462475 H3BNC9 293 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 IGBP1P78318 339 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 PTPROQ16827 1216 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 LEXMQ3ZCV2 418 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 APOA5Q6Q788 366 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 DNAJB3Q8WWF6 145 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 PGBD1Q96JS3 809 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 TCEANC2Q96MN5 208 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 SMARCAD1Q9H4L7 1026 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 JPH1Q9HDC5 661 aaPredicted RBP18.44■□□□□ 0.54
COL7A1-204ENST00000462475 CD320Q9NPF0 282 aa18.44■□□□□ 0.54
COL7A1-204ENST00000462475 TIGD5Q53EQ6 642 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 FBXO47Q5MNV8 452 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 RSPH3Q86UC2 560 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.43■□□□□ 0.54
COL7A1-204ENST00000462475 CYP2W1Q8TAV3 490 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 RC3H2Q9HBD1 1191 aaKnown RBP18.43■□□□□ 0.54
COL7A1-204ENST00000462475 KCNH7Q9NS40 1196 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 CDY2AQ9Y6F7 541 aa18.43■□□□□ 0.54
COL7A1-204ENST00000462475 MAFGO15525 162 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 LINC00271P0C7V0 271 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 CTNNB1P35222 781 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 NAPAP54920 295 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms