RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 KATNBL1Q9H079 304 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 ZHX1Q9UKY1 873 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-214ENST00000454018 FAM205CA6NFA0 338 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 FIBPO43427 364 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ZNF76P36508 570 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 CACNB2Q08289 660 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ORC2Q13416 577 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 MTMR1Q13613 665 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ACVR2BQ13705 512 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 LETM2Q2VYF4 491 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 RILPL1Q5EBL4 403 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 EARS2Q5JPH6 523 aaKnown RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 PPP4R3AQ6IN85 833 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 KCNV1Q6PIU1 500 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 EEPD1Q7L9B9 569 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 NLRX1Q86UT6 975 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 SH3TC2Q8TF17 1288 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ARMC5Q96C12 935 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 IPO9Q96P70 1041 aaKnown RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ZSCAN16Q9H4T2 348 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 UBIAD1Q9Y5Z9 338 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 DDX49Q9Y6V7 483 aaKnown RBP9.94□□□□□ -0.82
SYNE1-214ENST00000454018 ARID2Q68CP9 1835 aa9.94□□□□□ -0.82
SYNE1-214ENST00000454018 IGLV3-22A0A075B6J6 115 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 CYP3A7-CYP3A51PA0A087WV96 503 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 FAM86B1E9PN63 330 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MAFGO15525 162 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MSCO60682 206 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 RGS20O76081 388 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 F13A1P00488 732 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 FAM86B2P0C5J1 330 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 ZNF865P0CJ78 1059 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-214ENST00000454018 ZSCAN22P10073 491 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-214ENST00000454018 TGFB3P10600 412 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 AKR1A1P14550 325 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 ITGB5P18084 799 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 CYP3A7P24462 503 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 ICAM3P32942 547 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 DDIT3P35638 169 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 TRIM32Q13049 653 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 RESTQ13127 1097 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 TTLL4Q14679 1199 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 FERMT3Q86UX7 667 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MBOAT7Q96N66 472 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MXRA8Q9BRK3 442 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MCOLN1Q9GZU1 580 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 JADE2Q9NQC1 790 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 IGSF5Q9NSI5 407 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 KIAA1468Q9P260 1216 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 NOVA2Q9UNW9 492 aaKnown RBP9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MRVI1Q9Y6F6 885 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 SCN10AQ9Y5Y9 1956 aa9.93□□□□□ -0.82
SYNE1-214ENST00000454018 MEIS1O00470 390 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 NKRFO15226 690 aaKnown RBP eCLIP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 SEPT4O43236 478 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 CCNT1O60563 726 aaKnown RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 TDP2O95551 362 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 NUCB2P80303 420 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 PKP1Q13835 747 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 CCDC144BQ3MJ40 725 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 Q4G0T1 1027 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 TTC38Q5R3I4 469 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 TAPT1Q6NXT6 567 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 SEPT14Q6ZU15 432 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 LENG9Q96B70 501 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 ZNF333Q96JL9 665 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 KCNH7Q9NS40 1196 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 RTEL1Q9NZ71 1219 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 DDX25Q9UHL0 483 aaKnown RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 FAM184BQ9ULE4 1060 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 SPATA31C2B4DYI2 1134 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 EDIL3O43854 480 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 NEMFO60524 1076 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 UBA1P22314 1058 aaKnown RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 CNGA1P29973 690 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 CCND3P30281 292 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 ADCYAP1R1P41586 468 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 NR1H3Q13133 447 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 DUSP28Q4G0W2 176 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 PRR16Q569H4 304 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 PRAMEF19Q5SWL8 479 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 IQSEC1Q6DN90 963 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 PLA2G4DQ86XP0 818 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 GIMAP8Q8ND71 665 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 TRPV1Q8NER1 839 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 CYP2W1Q8TAV3 490 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 SENP7Q9BQF6 1050 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 WDR11Q9BZH6 1224 aa9.92□□□□□ -0.82
SYNE1-214ENST00000454018 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 PAK6Q9NQU5 681 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-214ENST00000454018 TBX3O15119 743 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 SLC37A4O43826 429 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 BMP15O95972 392 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 FBXO45P0C2W1 286 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 TXNP10599 105 aaKnown RBP9.91□□□□□ -0.82
SYNE1-214ENST00000454018 RARBP10826 455 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 TOB1P50616 345 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-214ENST00000454018 TNFAIP2Q03169 654 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 NEDD9Q14511 834 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 CCDC62Q6P9F0 684 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms