RNA–Protein interactions for RNA: snR39B

snR39B, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR39B, Length 96 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR39B	snR39B	KTR5	P53966	522 aa	Predicted RBP	0.28	□□□□□ -2.36
snR39B	snR39B	NUP116	Q02630	1113 aa		0.28	□□□□□ -2.36
snR39B	snR39B	SNO4	Q04902	237 aa		0.28	□□□□□ -2.36
snR39B	snR39B	FAR10	Q06001	478 aa		0.28	□□□□□ -2.36
snR39B	snR39B	HSP33	Q08914	237 aa	Known RBP	0.28	□□□□□ -2.36
snR39B	snR39B	HSP32	Q08992	237 aa		0.28	□□□□□ -2.36
snR39B	snR39B	SNU66	Q12420	587 aa	Predicted RBP	0.28	□□□□□ -2.36
snR39B	snR39B	YOR338W	Q99326	363 aa		0.28	□□□□□ -2.36
snR39B	snR39B	COX13	P32799	129 aa		0.27	□□□□□ -2.37
snR39B	snR39B	MUM2	P38236	366 aa		0.27	□□□□□ -2.37
snR39B	snR39B	MSR1	P38714	643 aa		0.27	□□□□□ -2.37
snR39B	snR39B	JLP2	P40206	208 aa		0.27	□□□□□ -2.37
snR39B	snR39B	IGD1	P43598	195 aa		0.27	□□□□□ -2.37
snR39B	snR39B	OCA1	P50946	238 aa	Predicted RBP	0.27	□□□□□ -2.37
snR39B	snR39B	DSL1	P53847	754 aa		0.27	□□□□□ -2.37
snR39B	snR39B	ALF1	P53904	254 aa		0.27	□□□□□ -2.37
snR39B	snR39B	RPT6	Q01939	405 aa	Known RBP	0.27	□□□□□ -2.37
snR39B	snR39B	RPL21A	Q02753	160 aa	Known RBP	0.27	□□□□□ -2.37
snR39B	snR39B	VPS38	Q05919	439 aa		0.27	□□□□□ -2.37
snR39B	snR39B	BLS1	Q06071	122 aa		0.27	□□□□□ -2.37
snR39B	snR39B	YGK3	Q12222	375 aa	Predicted RBP	0.27	□□□□□ -2.37
snR39B	snR39B	RPL21B	Q12672	160 aa	Known RBP	0.27	□□□□□ -2.37
snR39B	snR39B	HIS4	P00815	799 aa	Known RBP	0.26	□□□□□ -2.37
snR39B	snR39B	SNF6	P18888	332 aa		0.26	□□□□□ -2.37
snR39B	snR39B	RAD57	P25301	460 aa		0.26	□□□□□ -2.37
snR39B	snR39B	YEF1	P32622	495 aa		0.26	□□□□□ -2.37
snR39B	snR39B	SRB2	P34162	210 aa		0.26	□□□□□ -2.37
snR39B	snR39B	ANR2	P36090	516 aa	Predicted RBP	0.26	□□□□□ -2.37
snR39B	snR39B	AXL2	P38928	823 aa		0.26	□□□□□ -2.37
snR39B	snR39B	FHL1	P39521	936 aa		0.26	□□□□□ -2.37
snR39B	snR39B	PTI1	P39927	425 aa	Predicted RBP	0.26	□□□□□ -2.37
snR39B	snR39B	ALG5	P40350	334 aa		0.26	□□□□□ -2.37
snR39B	snR39B	ATG18	P43601	500 aa		0.26	□□□□□ -2.37
snR39B	snR39B	BAT2	P47176	376 aa	Known RBP	0.26	□□□□□ -2.37
snR39B	snR39B	MST27	P53176	234 aa		0.26	□□□□□ -2.37
snR39B	snR39B	CLD1	P53264	445 aa		0.26	□□□□□ -2.37
snR39B	snR39B	ZRG17	P53735	605 aa		0.26	□□□□□ -2.37
snR39B	snR39B	IPI3	P53877	555 aa		0.26	□□□□□ -2.37
snR39B	snR39B	RAD30	Q04049	632 aa		0.26	□□□□□ -2.37
snR39B	snR39B	RTN1	Q04947	295 aa	Known RBP	0.26	□□□□□ -2.37
snR39B	snR39B	YLR345W	Q06137	509 aa		0.26	□□□□□ -2.37
snR39B	snR39B	TIR4	Q12218	487 aa	Predicted RBP	0.26	□□□□□ -2.37
snR39B	snR39B	PEX22	P39718	180 aa		0.25	□□□□□ -2.37
snR39B	snR39B	YER010C	P40011	234 aa		0.25	□□□□□ -2.37
snR39B	snR39B	MAM33	P40513	266 aa		0.25	□□□□□ -2.37
snR39B	snR39B	HAC1	P41546	238 aa		0.25	□□□□□ -2.37
snR39B	snR39B	EGT2	P42835	1041 aa		0.25	□□□□□ -2.37
snR39B	snR39B	FRE4	P53746	719 aa		0.25	□□□□□ -2.37
snR39B	snR39B	RGM1	Q00453	211 aa		0.25	□□□□□ -2.37
snR39B	snR39B	YML037C	Q03703	340 aa		0.25	□□□□□ -2.37
snR39B	snR39B	RRP9	Q06506	573 aa	Known RBP	0.25	□□□□□ -2.37
snR39B	snR39B	CDC24	P11433	854 aa	Predicted RBP	0.24	□□□□□ -2.37
snR39B	snR39B	MKK1	P32490	508 aa		0.24	□□□□□ -2.37
snR39B	snR39B	SDH4	P37298	181 aa		0.24	□□□□□ -2.37
snR39B	snR39B	SBE22	P38814	852 aa		0.24	□□□□□ -2.37
snR39B	snR39B	TRR2	P38816	342 aa		0.24	□□□□□ -2.37
snR39B	snR39B	PFS1	P38872	237 aa		0.24	□□□□□ -2.37
snR39B	snR39B	LYS1	P38998	373 aa	RIP-Chip data	0.24	□□□□□ -2.37	not detected
snR39B	snR39B	CCT2	P39076	527 aa	Known RBP	0.24	□□□□□ -2.37
snR39B	snR39B	PCF11	P39081	626 aa	Predicted RBP	0.24	□□□□□ -2.37
snR39B	snR39B	COX14	P39103	70 aa		0.24	□□□□□ -2.37
snR39B	snR39B	ARC1	P46672	376 aa	Known RBP	0.24	□□□□□ -2.37
snR39B	snR39B	IMD4	P50094	524 aa	Known RBP	0.24	□□□□□ -2.37
snR39B	snR39B	VID30	P53076	958 aa		0.24	□□□□□ -2.37
snR39B	snR39B	VHT1	P53241	593 aa		0.24	□□□□□ -2.37
snR39B	snR39B	YSA1	Q01976	231 aa		0.24	□□□□□ -2.37
snR39B	snR39B	SKI8	Q02793	397 aa	Predicted RBP	0.24	□□□□□ -2.37
snR39B	snR39B	FIN1	Q03898	291 aa		0.24	□□□□□ -2.37
snR39B	snR39B	VTI1	Q04338	217 aa		0.24	□□□□□ -2.37
snR39B	snR39B	ORT1	Q12375	292 aa		0.24	□□□□□ -2.37
snR39B	snR39B	RMD5	Q12508	421 aa		0.24	□□□□□ -2.37
snR39B	snR39B	NAG1	Q8TGN9	163 aa		0.24	□□□□□ -2.37
snR39B	snR39B	YOL085C	Q99345	113 aa		0.24	□□□□□ -2.37
snR39B	snR39B	ATP4	P05626	244 aa		0.23	□□□□□ -2.37
snR39B	snR39B	STE7	P06784	515 aa		0.23	□□□□□ -2.37
snR39B	snR39B	ADH3	P07246	375 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	ASP3-2	P0CX77	362 aa		0.23	□□□□□ -2.37
snR39B	snR39B	ASP3-3	P0CX78	362 aa		0.23	□□□□□ -2.37
snR39B	snR39B	ASP3-4	P0CX79	362 aa		0.23	□□□□□ -2.37
snR39B	snR39B	RPL19A	P0CX82	189 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	RPL19B	P0CX83	189 aa	Predicted RBP	0.23	□□□□□ -2.37
snR39B	snR39B	ASP3-1	P0CZ17	362 aa		0.23	□□□□□ -2.37
snR39B	snR39B	SSB1	P11484	613 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	DAL5	P15365	543 aa		0.23	□□□□□ -2.37
snR39B	snR39B	ATP10	P18496	279 aa		0.23	□□□□□ -2.37
snR39B	snR39B	PRD1	P25375	712 aa		0.23	□□□□□ -2.37
snR39B	snR39B	TCD2	P36101	447 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	THI2	P38141	450 aa		0.23	□□□□□ -2.37
snR39B	snR39B	ECM34	P38728	170 aa		0.23	□□□□□ -2.37
snR39B	snR39B	SSB2	P40150	613 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	YNL208W	P40159	199 aa	Known RBP	0.23	□□□□□ -2.37
snR39B	snR39B	YIL059C	P40520	121 aa		0.23	□□□□□ -2.37
snR39B	snR39B	SGN1	P40561	250 aa	Known RBP RIP-Chip data	0.23	□□□□□ -2.37	not detected
snR39B	snR39B	COS4	P43542	379 aa		0.23	□□□□□ -2.37
snR39B	snR39B	PET130	P47065	347 aa		0.23	□□□□□ -2.37
snR39B	snR39B	AZR1	P50080	613 aa		0.23	□□□□□ -2.37
snR39B	snR39B	SYF1	Q04048	859 aa	Predicted RBP	0.23	□□□□□ -2.37
snR39B	snR39B	BCH1	Q05029	724 aa		0.23	□□□□□ -2.37
snR39B	snR39B	CDD1	Q06549	142 aa		0.23	□□□□□ -2.37
snR39B	snR39B	MFG1	Q07684	458 aa		0.23	□□□□□ -2.37

Retrieved 100 of 5,963 RNA–protein pairs in 33.6 ms