RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	RAD23	P32628	398 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	MNS1	P32906	549 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	MSN2	P33748	704 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YBR139W	P38109	508 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	PET100	P38958	111 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YFL067W	P43537	175 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	APC4	Q04601	652 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SNO4	Q04902	237 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YTH1	Q06102	208 aa	Predicted RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	HSP33	Q08914	237 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	HSP32	Q08992	237 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	WTM1	Q12363	437 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	APC2	Q12440	853 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SKS1	Q12505	502 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	NUP157	P40064	1391 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	ECM29	P38737	1868 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	FAS2	P19097	1887 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	PIS1	P06197	220 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	CBP6	P07253	162 aa	Predicted RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	ARD1	P07347	238 aa	Predicted RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	ARF1	P11076	181 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	CBS1	P14066	229 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	GLN3	P18494	730 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	POP5	P28005	173 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	DEG1	P31115	442 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	SIN4	P32259	974 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SMY1	P32364	656 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	CSE1	P33307	960 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	TCD2	P36101	447 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	RRP4	P38792	359 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	PEX22	P39718	180 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	HAT2	P39984	401 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	ESL1	P40456	1118 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YPS6	P40583	537 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	BUD13	P46947	266 aa	Predicted RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	GWT1	P47026	490 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	PET130	P47065	347 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	MDE1	P47095	244 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YGL108C	P53139	140 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SGF73	P53165	657 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	MKC7	P53379	596 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	CWC25	P53854	179 aa	Known RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	ERO1	Q03103	563 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YML108W	Q03759	105 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	RSA1	Q08932	381 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	ICL2	Q12031	575 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	YLL056C	Q12177	298 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	PCL9	Q12477	304 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	HSH49	Q99181	213 aa	Predicted RBP	0.84	□□□□□ -2.27
RKR1	YMR247C	MTR10	Q99189	972 aa		0.84	□□□□□ -2.27
RKR1	YMR247C	SPP41	P38904	1435 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	MYO4	P32492	1471 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	PET111	P08468	800 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	SPB1	P25582	841 aa	Predicted RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	BUB3	P26449	341 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	CDC60	P26637	1090 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	RFA2	P26754	273 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	SEC1	P30619	724 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	ACB1	P31787	87 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	APE2	P32454	952 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	BYE1	P36106	594 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	SMF2	P38778	549 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	ERV46	P39727	415 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	YEL057C	P39983	233 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	SEC24	P40482	926 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	DUO1	P53168	247 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	EOS1	P53938	366 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	TPS1	Q00764	495 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	ECM11	Q04110	302 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	YDR341C	Q05506	607 aa	Known RBP	0.84	□□□□□ -2.28
RKR1	YMR247C	GRX6	Q12438	231 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	SPT7	P35177	1332 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	RTC1	Q08281	1341 aa		0.84	□□□□□ -2.28
RKR1	YMR247C	MAS2	P11914	482 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	REV1	P12689	985 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	POL1	P13382	1468 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	VPS15	P22219	1454 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	ZIP1	P31111	875 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	KAR9	P32526	644 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	MPE1	P35728	441 aa	Known RBP	0.83	□□□□□ -2.28
RKR1	YMR247C	CHK1	P38147	527 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YBR225W	P38321	900 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	VHC1	P38329	1120 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	POP6	P53218	158 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YPR003C	P53394	754 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	MDM1	Q01846	1127 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YSA1	Q01976	231 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YMR102C	Q03177	834 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YDR239C	Q03780	787 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YMR155W	Q03795	547 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YMR130W	Q04223	302 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	PBA1	Q05778	276 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	HRI1	Q05905	244 aa	Known RBP	0.83	□□□□□ -2.28
RKR1	YMR247C	PDR11	P40550	1411 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YLR419W	Q06698	1435 aa	Known RBP	0.83	□□□□□ -2.28
RKR1	YMR247C	LYS2	P07702	1392 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	TRX2	P22803	104 aa	Known RBP	0.83	□□□□□ -2.28
RKR1	YMR247C	IFM1	P25038	676 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	LDB16	P25587	256 aa		0.83	□□□□□ -2.28
RKR1	YMR247C	YCR100C	P25606	316 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms