RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKN1	YGR143W	CRP1	P38845	465 aa	Known RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	RMD6	P39975	231 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	OSW5	P40219	148 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	NUP82	P40368	713 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	NAS2	P40555	220 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	CFD1	P40558	293 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	IBA57	P47158	497 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	SPT20	P50875	604 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	CWC23	P52868	283 aa	Predicted RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	TNA1	P53322	534 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	TUB4	P53378	473 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	TGL2	P54857	326 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	ECM18	Q04623	453 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	YPR127W	Q06494	345 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	MFG1	Q07684	458 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	GUD1	Q07729	489 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	LDB18	Q07887	179 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	NSL1	Q12143	216 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	YOL107W	Q12239	342 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	HER1	Q12276	1246 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	PRC1	P00729	532 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	AI3	P03877	415 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	FUM1	P08417	488 aa	Known RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	ERG11	P10614	530 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	ZWF1	P11412	505 aa	Known RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	DBR1	P24309	405 aa	Known RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	RNA14	P25298	677 aa	Known RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	POT1	P27796	417 aa	Known RBP RIP-Chip data	5.69	□□□□□ -1.5	not detected
SKN1	YGR143W	BEM1	P29366	551 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	SPO23	P33757	523 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	LOT5	P34234	306 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	YET1	P35723	206 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	RBG1	P39729	369 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	MAM33	P40513	266 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	GUF1	P46943	645 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	MTG1	Q03151	367 aa	Predicted RBP	5.69	□□□□□ -1.5
SKN1	YGR143W	PRM15	Q03262	622 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	OXR1	Q08952	273 aa		5.69	□□□□□ -1.5
SKN1	YGR143W	HXK2	P04807	486 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RPL35A	P0CX84	120 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RPL35B	P0CX85	120 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RRP7	P25368	297 aa	Predicted RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RER1	P25560	188 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	ARO7	P32178	256 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	SIP1	P32578	815 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	UGA4	P32837	571 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	URA8	P38627	578 aa	Predicted RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	COS8	P38723	381 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	PLB1	P39105	664 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	SWC4	P53201	476 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
SKN1	YGR143W	HCH1	P53834	153 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	RPL34A	P87262	121 aa	Predicted RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RSC9	Q03124	581 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	GIS4	Q04233	774 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	THI7	Q05998	598 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	HDA2	Q06629	674 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	NBA1	Q08229	501 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	YDL176W	Q12027	708 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	FAL1	Q12099	399 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	MTF1	P14908	341 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	PRE7	P23724	241 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	PTC6	P25646	442 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	YBR285W	P38354	144 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	ACO2	P39533	789 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	YEL025C	P39991	1188 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	MET28	P40573	187 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	COQ6	P53318	479 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	UME1	Q03010	460 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	TRM82	Q03774	444 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	MRX10	Q05648	414 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	FMP45	Q07651	309 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	NGL1	Q08213	363 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	RRP40	Q08285	240 aa	Known RBP	5.68	□□□□□ -1.5
SKN1	YGR143W	APC9	Q12107	265 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	MDY2	Q12285	212 aa		5.68	□□□□□ -1.5
SKN1	YGR143W	COX4	P04037	155 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	IMA3	P0CW40	589 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	IMA4	P0CW41	589 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	MAS2	P11914	482 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	MRPL44	P19956	98 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	GRR1	P24814	1151 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	LST4	P34239	828 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	PRE3	P38624	215 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	SAH1	P39954	449 aa	Known RBP	5.67	□□□□□ -1.5
SKN1	YGR143W	ECM10	P39987	644 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	LSM4	P40070	187 aa	Known RBP	5.67	□□□□□ -1.5
SKN1	YGR143W	LCP5	P40079	357 aa	Predicted RBP	5.67	□□□□□ -1.5
SKN1	YGR143W	THI6	P41835	540 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	YJR030C	P47101	745 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	GUP1	P53154	560 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	ARE2	P53629	642 aa	Known RBP	5.67	□□□□□ -1.5
SKN1	YGR143W	AIM32	Q04689	311 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	CDC73	Q06697	393 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	IMA2	Q08295	589 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	SRO7	Q12038	1033 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	ATX2	Q12067	313 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	AFI1	Q99222	893 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	YLR422W	Q06409	1932 aa		5.67	□□□□□ -1.5
SKN1	YGR143W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms