RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	RRP45	Q05636	305 aa	Known RBP	13.4	□□□□□ -0.26
DEP1	YAL013W	ARR1	Q06596	294 aa		13.4	□□□□□ -0.26
DEP1	YAL013W	MDM12	Q92328	271 aa		13.4	□□□□□ -0.26
DEP1	YAL013W	PRP2	P20095	876 aa	Predicted RBP	13.39	□□□□□ -0.27
DEP1	YAL013W	AGP1	P25376	633 aa		13.39	□□□□□ -0.27
DEP1	YAL013W	NUP2	P32499	720 aa		13.39	□□□□□ -0.27
DEP1	YAL013W	SFA1	P32771	386 aa		13.39	□□□□□ -0.27
DEP1	YAL013W	APT2	P36973	181 aa		13.39	□□□□□ -0.27
DEP1	YAL013W	TSL1	P38427	1098 aa	Known RBP	13.39	□□□□□ -0.27
DEP1	YAL013W	ARF3	P40994	183 aa	RIP-Chip data	13.39	□□□□□ -0.27	not detected
DEP1	YAL013W	ARI1	P53111	347 aa	Known RBP	13.39	□□□□□ -0.27
DEP1	YAL013W	YOL159C-A	Q3E769	90 aa		13.39	□□□□□ -0.27
DEP1	YAL013W	POL2	P21951	2222 aa	Known RBP	13.39	□□□□□ -0.27
DEP1	YAL013W	STE7	P06784	515 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	SUI3	P09064	285 aa	Known RBP	13.38	□□□□□ -0.27
DEP1	YAL013W	ATR1	P13090	542 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	APE2	P32454	952 aa	Known RBP	13.38	□□□□□ -0.27
DEP1	YAL013W	MDJ1	P35191	511 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	SCO2	P38072	301 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	BNA4	P38169	460 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	DLD3	P39976	496 aa	Known RBP	13.38	□□□□□ -0.27
DEP1	YAL013W	YEL020C	P39994	560 aa		13.38	□□□□□ -0.27
DEP1	YAL013W	RRP12	Q12754	1228 aa	Known RBP	13.38	□□□□□ -0.27
DEP1	YAL013W	SSH4	P32343	579 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	13.37	□□□□□ -0.27	not detected
DEP1	YAL013W	SSO1	P32867	290 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	SWD1	P39706	426 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	RIO2	P40160	425 aa	Known RBP	13.37	□□□□□ -0.27
DEP1	YAL013W	GVP36	P40531	326 aa	Known RBP	13.37	□□□□□ -0.27
DEP1	YAL013W	VMA10	P48836	114 aa	Known RBP	13.37	□□□□□ -0.27
DEP1	YAL013W	MSC1	Q03104	513 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	GAD1	Q04792	585 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	TEN1	Q07921	160 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	BMT6	Q12291	365 aa		13.37	□□□□□ -0.27
DEP1	YAL013W	POL4	P25615	582 aa		13.36	□□□□□ -0.27
DEP1	YAL013W	PTC2	P39966	464 aa	Known RBP	13.36	□□□□□ -0.27
DEP1	YAL013W	ELP2	P42935	788 aa		13.36	□□□□□ -0.27
DEP1	YAL013W	ROG1	P53118	685 aa		13.36	□□□□□ -0.27
DEP1	YAL013W	YDR262W	Q12331	272 aa		13.36	□□□□□ -0.27
DEP1	YAL013W	LAG2	Q92325	660 aa		13.36	□□□□□ -0.27
DEP1	YAL013W	CBS2	P14905	389 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	CLB3	P24870	427 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	PTP1	P25044	335 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	DOA1	P36037	715 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	MPM1	P40364	252 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	LAS21	P40367	830 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	YPS6	P40583	537 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	OAZ1	Q02803	292 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	MFB1	Q04922	465 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	NDL1	Q06568	189 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	MCA1	Q08601	432 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	IRC13	Q08630	104 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	YDL199C	Q12407	687 aa		13.35	□□□□□ -0.27
DEP1	YAL013W	CLB4	P24871	460 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	BCK2	P33306	851 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	UTH1	P36135	365 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	YHR177W	P38867	453 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	QDR2	P40474	542 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	NEO1	P40527	1151 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	PAC11	P40960	533 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	BNA3	P47039	444 aa	Known RBP	13.34	□□□□□ -0.27
DEP1	YAL013W	TOM22	P49334	152 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	YPR097W	Q06839	1073 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	RRT8	Q08219	342 aa		13.34	□□□□□ -0.27
DEP1	YAL013W	TOR2	P32600	2474 aa	Known RBP	13.33	□□□□□ -0.28
DEP1	YAL013W	FBA1	P14540	359 aa	Known RBP	13.33	□□□□□ -0.28
DEP1	YAL013W	NTG1	P31378	399 aa		13.33	□□□□□ -0.28
DEP1	YAL013W	SUI1	P32911	108 aa	Known RBP	13.33	□□□□□ -0.28
DEP1	YAL013W	CSL4	P53859	292 aa	Predicted RBP	13.33	□□□□□ -0.28
DEP1	YAL013W	PUT2	P07275	575 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	SLY41	P22215	453 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	PRO1	P32264	428 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	CDC3	P32457	520 aa	Known RBP	13.32	□□□□□ -0.28
DEP1	YAL013W	SPC34	P36131	295 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	PAC10	P48363	199 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	GPI8	P49018	411 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	ESF2	P53743	316 aa	Known RBP	13.32	□□□□□ -0.28
DEP1	YAL013W	BNI4	P53858	892 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	RRN11	Q04712	507 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	ATG38	Q05789	226 aa	Known RBP	13.32	□□□□□ -0.28
DEP1	YAL013W	STP3	Q05937	343 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	REH1	Q06709	432 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	YLR036C	Q07986	203 aa		13.32	□□□□□ -0.28
DEP1	YAL013W	LEU9	Q12166	604 aa	Known RBP	13.32	□□□□□ -0.28
DEP1	YAL013W	RPS1B	P23248	255 aa	Known RBP	13.31	□□□□□ -0.28
DEP1	YAL013W	NTH1	P32356	751 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	ATG14	P38270	344 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	AIM2	P39721	246 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	LTP1	P40347	161 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	RRN5	Q02983	363 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	YMR310C	Q04867	317 aa	Predicted RBP	13.31	□□□□□ -0.28
DEP1	YAL013W	ISR1	Q06098	443 aa	Known RBP	13.31	□□□□□ -0.28
DEP1	YAL013W	BOP2	Q06150	570 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	DBP9	Q06218	594 aa	Known RBP	13.31	□□□□□ -0.28
DEP1	YAL013W	MMT2	Q08970	484 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	RKM5	Q12367	367 aa		13.31	□□□□□ -0.28
DEP1	YAL013W	MER1	P16523	270 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	MGR1	P25573	417 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	SRB5	P32585	307 aa		13.3	□□□□□ -0.28
DEP1	YAL013W	OAR1	P35731	278 aa		13.3	□□□□□ -0.28

Retrieved 100 of 5,963 RNA–protein pairs in 45.7 ms