RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PIGSQ96S52 555 aa22.5■■□□□ 1.19
CLN3-262ENST00000637699 MICAL3Q7RTP6 2002 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 PI4K2BG5E9Z4 385 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 UPP2O95045 317 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 IGHDP01880 384 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 LGALS2P05162 132 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 CTSHP09668 335 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 SLC35G1Q2M3R5 365 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 FAM178BQ8IXR5 827 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 SP7Q8TDD2 431 aaPredicted RBP22.49■■□□□ 1.19
CLN3-262ENST00000637699 SEPT8Q92599 483 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 MRPL38Q96DV4 380 aaKnown RBP22.49■■□□□ 1.19
CLN3-262ENST00000637699 YME1L1Q96TA2 773 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 OSBPL7Q9BZF2 842 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 RNPEPQ9H4A4 650 aa22.49■■□□□ 1.19
CLN3-262ENST00000637699 ARIH1Q9Y4X5 557 aaPredicted RBP22.49■■□□□ 1.19
CLN3-262ENST00000637699 NOP56O00567 594 aaKnown RBP22.48■■□□□ 1.19
CLN3-262ENST00000637699 IL9P15248 144 aa22.48■■□□□ 1.19
CLN3-262ENST00000637699 HOXD11P31277 338 aaPredicted RBP22.48■■□□□ 1.19
CLN3-262ENST00000637699 EPC2Q52LR7 807 aa22.48■■□□□ 1.19
CLN3-262ENST00000637699 PTCRAQ6ISU1 281 aaPredicted RBP22.48■■□□□ 1.19
CLN3-262ENST00000637699 GJD3Q8N144 294 aa22.48■■□□□ 1.19
CLN3-262ENST00000637699 YTHDC1Q96MU7 727 aaKnown RBP22.48■■□□□ 1.19
CLN3-262ENST00000637699 IL25Q9H293 177 aa22.48■■□□□ 1.19
CLN3-262ENST00000637699 BAZ2BQ9UIF8 2168 aaKnown RBP22.48■■□□□ 1.19
CLN3-262ENST00000637699 HOXC8P31273 242 aa22.47■■□□□ 1.19
CLN3-262ENST00000637699 SSTR3P32745 418 aaPredicted RBP22.47■■□□□ 1.19
CLN3-262ENST00000637699 TRAF1Q13077 416 aa22.47■■□□□ 1.19
CLN3-262ENST00000637699 PTPROQ16827 1216 aa22.47■■□□□ 1.19
CLN3-262ENST00000637699 SETD4Q9NVD3 440 aa22.47■■□□□ 1.19
CLN3-262ENST00000637699 GRM4Q14833 912 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 CYFIP1Q7L576 1253 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 TOP1MTQ969P6 601 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 SAMD11Q96NU1 681 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 RIOX1Q9H6W3 641 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 RTEL1Q9NZ71 1219 aa22.46■■□□□ 1.19
CLN3-262ENST00000637699 H3BQ06 376 aaPredicted RBP22.45■■□□□ 1.18
CLN3-262ENST00000637699 CYTH3O43739 400 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 MRPS9P82933 396 aaKnown RBP22.45■■□□□ 1.18
CLN3-262ENST00000637699 TRDNQ13061 729 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 GPM6BQ13491 265 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 AAMPQ13685 434 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 GNPTABQ3T906 1256 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 EP400NLQ6ZTU2 488 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 BANK1Q8NDB2 785 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 PIBF1Q8WXW3 757 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 USP26Q9BXU7 913 aa22.45■■□□□ 1.18
CLN3-262ENST00000637699 PNMA6FA0A0J9YX94 578 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.44■■□□□ 1.18
CLN3-262ENST00000637699 GRXCR2A6NFK2 248 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 H3BNC9 293 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 IFIT3O14879 490 aaKnown RBP22.44■■□□□ 1.18
CLN3-262ENST00000637699 NEDD9Q14511 834 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 METTL7BQ6UX53 244 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 TRIM50Q86XT4 487 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 TMEM192Q8IY95 271 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 IFIH1Q9BYX4 1025 aaKnown RBP22.44■■□□□ 1.18
CLN3-262ENST00000637699 SENP2Q9HC62 589 aa22.44■■□□□ 1.18
CLN3-262ENST00000637699 SPATA31C2B4DYI2 1134 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 CAND2O75155 1236 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 GNAT1P11488 350 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 ICAM3P32942 547 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 SP4Q02446 784 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 SEMA3FQ13275 785 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 TIGD5Q53EQ6 642 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 TCEAL5Q5H9L2 206 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 UTP14CQ5TAP6 766 aaKnown RBP22.43■■□□□ 1.18
CLN3-262ENST00000637699 NEK9Q8TD19 979 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 INPP4AQ96PE3 977 aaPredicted RBP22.43■■□□□ 1.18
CLN3-262ENST00000637699 GPR20Q99678 358 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 TELO2Q9Y4R8 837 aa22.43■■□□□ 1.18
CLN3-262ENST00000637699 ERICH2A1L162 156 aa22.42■■□□□ 1.18
CLN3-262ENST00000637699 ARHGAP4P98171 946 aa22.42■■□□□ 1.18
CLN3-262ENST00000637699 DOCK5Q9H7D0 1870 aa22.41■■□□□ 1.18
CLN3-262ENST00000637699 FIBPO43427 364 aa22.41■■□□□ 1.18
CLN3-262ENST00000637699 STAM2O75886 525 aa22.41■■□□□ 1.18
CLN3-262ENST00000637699 PUS10Q3MIT2 529 aaKnown RBP22.41■■□□□ 1.18
CLN3-262ENST00000637699 ZNF215Q9UL58 517 aaPredicted RBP22.41■■□□□ 1.18
CLN3-262ENST00000637699 SUPT16HQ9Y5B9 1047 aaKnown RBP22.41■■□□□ 1.18
CLN3-262ENST00000637699 FRMPD4Q14CM0 1322 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 PRR33A8MZF0 331 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 CYP21A2P08686 494 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 TROAPQ12815 778 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 WTAPQ15007 396 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 LMBR1Q8WVP7 490 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 APBB2Q92870 758 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 PABPC5Q96DU9 382 aaKnown RBP22.4■■□□□ 1.18
CLN3-262ENST00000637699 IL17RAQ96F46 866 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 UIMC1Q96RL1 719 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 NSUN3Q9H649 340 aaKnown RBP22.4■■□□□ 1.18
CLN3-262ENST00000637699 U3KPZ7 1027 aaPredicted RBP22.4■■□□□ 1.18
CLN3-262ENST00000637699 MYO7AQ13402 2215 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 MUC6Q6W4X9 2439 aa22.4■■□□□ 1.18
CLN3-262ENST00000637699 ALADP13716 330 aa22.39■■□□□ 1.17
CLN3-262ENST00000637699 ADAM17P78536 824 aa22.39■■□□□ 1.17
CLN3-262ENST00000637699 FAM26DQ5JW98 314 aa22.39■■□□□ 1.17
CLN3-262ENST00000637699 RALYLQ86SE5 291 aaKnown RBP22.39■■□□□ 1.17
CLN3-262ENST00000637699 FIBCD1Q8N539 461 aa22.39■■□□□ 1.17
CLN3-262ENST00000637699 CHRNA1P02708 482 aa22.38■■□□□ 1.17
CLN3-262ENST00000637699 CTNNB1P35222 781 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms