RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
LIG1-213ENST00000596672 BRDTQ58F21 947 aaPredicted RBP12.08□□□□□ -0.48
LIG1-213ENST00000596672 ZNF618Q5T7W0 954 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 PCNX4Q63HM2 1172 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 TMTC2Q8N394 836 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 LZTS2Q9BRK4 669 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 PSTPIP2Q9H939 334 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 TMEM260Q9NX78 707 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 UBIAD1Q9Y5Z9 338 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 V9GY48 417 aaPredicted RBP12.08□□□□□ -0.48
LIG1-213ENST00000596672 MICAL3Q7RTP6 2002 aa12.08□□□□□ -0.48
LIG1-213ENST00000596672 LCHNA4D1U4 455 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 DLL1O00548 723 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 TREHO43280 583 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 PPFIA3O75145 1194 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 CXCL10P02778 98 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 FOSL2P15408 326 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 HSPA4P34932 840 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 DEFB103AP81534 67 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 APOBRQ0VD83 1088 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 LRRC8DQ7L1W4 858 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 SERINC5Q86VE9 423 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG1-213ENST00000596672 RPUSD2Q8IZ73 545 aaKnown RBP12.07□□□□□ -0.48
LIG1-213ENST00000596672 ZBTB10Q96DT7 871 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 PCYT2Q99447 389 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 COL25A1Q9BXS0 654 aaPredicted RBP12.07□□□□□ -0.48
LIG1-213ENST00000596672 RNPEPQ9H4A4 650 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 SLC4A7Q9Y6M7 1214 aa12.07□□□□□ -0.48
LIG1-213ENST00000596672 LOXHD1Q8IVV2 1947 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 KLF18A0A0U1RQI7 1052 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 ZBBXA8MT70 800 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 H3BRB1 525 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 STXBP3O00186 592 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 FIBPO43427 364 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SMIM10L2AP0DMW4 78 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SMIM10L2BP0DMW5 78 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SELPP16109 830 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 ATP2A2P16615 1042 aaKnown RBP12.06□□□□□ -0.48
LIG1-213ENST00000596672 GNAQP50148 359 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SP4Q02446 784 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 PTK7Q13308 1070 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 PKN1Q16512 942 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 KRT40Q6A162 431 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 KCNV1Q6PIU1 500 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 METTL7BQ6UX53 244 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 HEATR3Q7Z4Q2 680 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 C7orf31Q8N865 590 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SMARCC2Q8TAQ2 1214 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 AFAP1L1Q8TED9 768 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 TUT1Q9H6E5 874 aaKnown RBP12.06□□□□□ -0.48
LIG1-213ENST00000596672 CERS4Q9HA82 394 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 MLXIPQ9HAP2 919 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 SETD4Q9NVD3 440 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 PKD2L1Q9P0L9 805 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 PCDHA6Q9UN73 950 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 PCDHA8Q9Y5H6 950 aa12.06□□□□□ -0.48
LIG1-213ENST00000596672 WDR81Q562E7 1941 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 ZBTB43O43298 467 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 DTNBO60941 627 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CA3P07451 260 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CALM1P0DP23 149 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CALM2P0DP24 149 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CALM3P0DP25 149 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 ARP10275 920 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 RFC2P35250 354 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CLK2P49760 499 aaKnown RBP12.05□□□□□ -0.48
LIG1-213ENST00000596672 WDR5P61964 334 aaKnown RBP12.05□□□□□ -0.48
LIG1-213ENST00000596672 BFSP2Q13515 415 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 NTRK3Q16288 839 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 RTN1Q16799 776 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 UTP14CQ5TAP6 766 aaKnown RBP12.05□□□□□ -0.48
LIG1-213ENST00000596672 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.05□□□□□ -0.488e-7■□□□□ 9.2
LIG1-213ENST00000596672 RUFY4Q6ZNE9 571 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 Q6ZUG5 572 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 RETREG2Q8NC44 543 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CAGE1Q8TC20 777 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CRYGNQ8WXF5 182 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 CCDC136Q96JN2 1154 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 SENP7Q9BQF6 1050 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 AGXT2Q9BYV1 514 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 FTOQ9C0B1 505 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIG1-213ENST00000596672 SEC63Q9UGP8 760 aaKnown RBP12.05□□□□□ -0.48
LIG1-213ENST00000596672 NOD1Q9Y239 953 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 PCDHA11Q9Y5I1 949 aa12.05□□□□□ -0.48
LIG1-213ENST00000596672 PFKMP08237 780 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 TAP1Q03518 808 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 TRAF1Q13077 416 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 ITGB3BPQ13352 177 aaPredicted RBP12.04□□□□□ -0.48
LIG1-213ENST00000596672 RAB30Q15771 203 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 MARCH8Q5T0T0 291 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 HERC6Q8IVU3 1022 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 BRF1Q92994 677 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 JAKMIP1Q96N16 626 aaKnown RBP12.04□□□□□ -0.48
LIG1-213ENST00000596672 UIMC1Q96RL1 719 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 LARP6Q9BRS8 491 aaKnown RBP12.04□□□□□ -0.48
LIG1-213ENST00000596672 RIC8AQ9NPQ8 531 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 MSRAQ9UJ68 235 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 EVPLQ92817 2033 aa12.04□□□□□ -0.48
LIG1-213ENST00000596672 TCF20Q9UGU0 1960 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms