RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 SIP14410 1827 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 SOX1O00570 391 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 TLR3O15455 904 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 EDIL3O43854 480 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 PPFIA4O75335 1185 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 DEXIO95424 95 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 ARHGAP4P98171 946 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 MTMR1Q13613 665 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 NEDD9Q14511 834 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 C9orf50Q5SZB4 431 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 TRIM22Q8IYM9 498 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 REXO1Q8N1G1 1221 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 NECAB1Q8N987 351 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 CCDC148Q8NFR7 591 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 CCDC12Q8WUD4 166 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 GPR20Q99678 358 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 MXRA8Q9BRK3 442 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 NOC4LQ9BVI4 516 aaKnown RBP12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 PPP1R12CQ9BZL4 782 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 EHMT1Q9H9B1 1298 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 PTPRSQ13332 1948 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 LOXHD1Q8IVV2 1947 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 STK36Q9NRP7 1315 aa12.56□□□□□ -0.4
SHKBP1-206ENST00000595523 IGLV3-22A0A075B6J6 115 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 FAM86B1E9PN63 330 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 M0R2N6 131 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 MEIS1O00470 390 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 LGALS2P05162 132 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 CYP3A4P08684 503 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 FAM86B2P0C5J1 330 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 ARP10275 920 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 CYP2C9P11712 490 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 GNA11P29992 359 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 CYP2C18P33260 490 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 RBM25P49756 843 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 PSEN2P49810 448 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 CHMP4BP1P59074 171 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 PTPN11Q06124 597 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 HIC1Q14526 733 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 MFSD10Q14728 455 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 KIAA0753Q2KHM9 967 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 CEP55Q53EZ4 464 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 FAM47CQ5HY64 1035 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 GDF6Q6KF10 455 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 MFSD5Q6N075 450 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 SESTD1Q86VW0 696 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 GTF3C6Q969F1 213 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 WNT8AQ9H1J5 351 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 HIPK3Q9H422 1215 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 KCNH7Q9NS40 1196 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 PKD2L1Q9P0L9 805 aa12.55□□□□□ -0.4
SHKBP1-206ENST00000595523 EVPLQ92817 2033 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 FDPSP14324 419 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 CSF2RAP15509 400 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 SP4Q02446 784 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 FPGSQ05932 587 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 ITGB3BPQ13352 177 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 SHHQ15465 462 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 CPLX2Q6PUV4 134 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 C16orf59Q7L2K0 433 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 TRIM50Q86XT4 487 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 VWCEQ96DN2 955 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 CDHR1Q96JP9 859 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 ALG1Q9BT22 464 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 C22orf23Q9BZE7 217 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 GJB4Q9NTQ9 266 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 HDAC6Q9UBN7 1215 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 GTF2IRD1Q9UHL9 959 aa12.54□□□□□ -0.4
SHKBP1-206ENST00000595523 GSTTP1A0A1W2PQM5 241 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 NOP56O00567 594 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 MAFGO15525 162 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 CDKL5O76039 1030 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 HOXC8P31273 242 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 NLRP5P59047 1200 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 LRIT3Q3SXY7 679 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 NIPA1Q7RTP0 329 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 DAGLBQ8NCG7 672 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 GIMAP8Q8ND71 665 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 NSUN7Q8NE18 718 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 BICD2Q8TD16 824 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 DHX38Q92620 1227 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 LRCH3Q96II8 777 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 PHF20Q9BVI0 1012 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 KATNAL1Q9BW62 490 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 AGO4Q9HCK5 861 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 PCDHA4Q9UN74 947 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 KCNJ14Q9UNX9 436 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 CHD7Q9P2D1 2997 aa12.53□□□□□ -0.4
SHKBP1-206ENST00000595523 MYO9BQ13459 2157 aa12.52□□□□□ -0.4
SHKBP1-206ENST00000595523 COL6A3P12111 3177 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 H3BRB1 525 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 RBAK-RBAKDNI3L0D1 243 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 JAK2O60674 1132 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 SUPT20HL2P0C7V6 817 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 CIITAP33076 1130 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 TCF7P36402 384 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 CCL23P55773 120 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 ZNF200P98182 395 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 PTGISQ16647 500 aa12.52□□□□□ -0.41
SHKBP1-206ENST00000595523 MCTP2Q6DN12 878 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms