RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.43□□□□□ -0.74
LDLR-210ENST00000559340 RNF208Q9H0X6 261 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 PCDHA12Q9UN75 941 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 LOXHD1Q8IVV2 1947 aa10.43□□□□□ -0.74
LDLR-210ENST00000559340 NOP56O00567 594 aaKnown RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 MSH4O15457 936 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 DYNC1LI2O43237 492 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 EDIL3O43854 480 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 YEATS4O95619 227 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 GGPS1O95749 300 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 CCL5P13501 91 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 SMPD1P17405 629 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 CCND3P30281 292 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 SFNP31947 248 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 CPT1AP50416 773 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 TRIM32Q13049 653 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 PTGDRQ13258 359 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 PKP1Q13835 747 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 LY6KQ17RY6 165 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 ZNF746Q6NUN9 644 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 DTHD1Q6ZMT9 781 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 RNF180Q86T96 592 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 PCSK9Q8NBP7 692 aaKnown RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 TRPV1Q8NER1 839 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 RDM1Q8NG50 284 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 EMID1Q96A84 441 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 ZNF333Q96JL9 665 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 SCAND2PQ9GZW5 306 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 JPH1Q9HDC5 661 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 KCNMB3Q9NPA1 279 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 POLR3EQ9NVU0 708 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 SLC9A2Q9UBY0 812 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 GNEQ9Y223 722 aaKnown RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 PCDHB6Q9Y5E3 794 aa10.42□□□□□ -0.74
LDLR-210ENST00000559340 MORC2Q9Y6X9 1032 aaPredicted RBP10.42□□□□□ -0.74
LDLR-210ENST00000559340 SLC37A4O43826 429 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 DKC1O60832 514 aaKnown RBP eCLIP10.41□□□□□ -0.74
LDLR-210ENST00000559340 PPFIA4O75335 1185 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 GJB1P08034 283 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 KCNA2P16389 499 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 NCLP19338 710 aaKnown RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 UBA1P22314 1058 aaKnown RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 TXKP42681 527 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 JAK3P52333 1124 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 GJA9P57773 515 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 ATP2C1P98194 919 aaPredicted RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 SEMA3FQ13275 785 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 PDIA5Q14554 519 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 SLC39A14Q15043 492 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 MIS18BP1Q6P0N0 1132 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 CYFIP1Q7L576 1253 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 TLK2Q86UE8 772 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 SMAP1Q8IYB5 467 aaPredicted RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 ERMNQ8TAM6 284 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 ETNPPLQ8TBG4 499 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 KCNG4Q8TDN1 519 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 SEPT1Q8WYJ6 367 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 TNPO1Q92973 898 aaKnown RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 FERMT2Q96AC1 680 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 LENG9Q96B70 501 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 SPATA33Q96N06 139 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 MTMR9Q96QG7 549 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 UNC93B1Q9H1C4 597 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 UPF3AQ9H1J1 476 aaKnown RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 XPNPEP3Q9NQH7 507 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 PAK6Q9NQU5 681 aaPredicted RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 PKD2L1Q9P0L9 805 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 ZDHHC9Q9Y397 364 aa10.41□□□□□ -0.74
LDLR-210ENST00000559340 DDX49Q9Y6V7 483 aaKnown RBP10.41□□□□□ -0.74
LDLR-210ENST00000559340 ELP1O95163 1332 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 WDR64B1ANS9 1081 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 SPTLC2O15270 562 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 ATP9AO75110 1047 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 PPP6R2O75170 966 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 PSMD10O75832 226 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 FARP2O94887 1054 aaPredicted RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 ARIH2O95376 493 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 SGPL1O95470 568 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 TFRCP02786 760 aaKnown RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 PSAPP07602 524 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 C6orf222P0C671 652 aaPredicted RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 NASPP49321 788 aaPredicted RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 NKX3-2P78367 333 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 SP2Q02086 613 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 CEBPZQ03701 1054 aaKnown RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 ARHGAP1Q07960 439 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 PPP2R5CQ13362 524 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 DGKDQ16760 1214 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 GNASQ5JWF2 1037 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 FAM160B1Q5W0V3 765 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 MIER3Q7Z3K6 550 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 C4orf32Q8N8J7 132 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 PPTC7Q8NI37 304 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 DEFB118Q96PH6 123 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 USP28Q96RU2 1077 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 TSEN34Q9BSV6 310 aaKnown RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 AZI2Q9H6S1 392 aa10.4□□□□□ -0.74
LDLR-210ENST00000559340 TTC12Q9H892 705 aaPredicted RBP10.4□□□□□ -0.74
LDLR-210ENST00000559340 TFIP11Q9UBB9 837 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms