RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 HDAC6Q9UBN7 1215 aa18.03■□□□□ 0.48
HDAC4-213ENST00000496347 ZNF215Q9UL58 517 aaPredicted RBP18.03■□□□□ 0.48
HDAC4-213ENST00000496347 NAP1L2Q9ULW6 460 aaPredicted RBP18.03■□□□□ 0.48
HDAC4-213ENST00000496347 TRANK1O15050 2925 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 SORBS3O60504 671 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 IQCF3P0C7M6 154 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 ACTN1P12814 892 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 CPA1P15085 419 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 CDC27P30260 824 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 APOBRQ0VD83 1088 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 AP3B2Q13367 1082 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 MTMR1Q13613 665 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 RAB30Q15771 203 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 TYW1BQ6NUM6 668 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 CYFIP1Q7L576 1253 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 OTOP2Q7RTS6 562 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 KAT6AQ92794 2004 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 VWCEQ96DN2 955 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 FAM161BQ96MY7 647 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 GPR20Q99678 358 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 ALG1Q9BT22 464 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 SEMA6BQ9H3T3 888 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 RTEL1Q9NZ71 1219 aa18.02■□□□□ 0.48
HDAC4-213ENST00000496347 H3BRB1 525 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 FOSP01100 380 aaPredicted RBP18.01■□□□□ 0.47
HDAC4-213ENST00000496347 SELPP16109 830 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 ITGB5P18084 799 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 HOXC8P31273 242 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 PTK7Q13308 1070 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 PFKFB3Q16875 520 aaPredicted RBP18.01■□□□□ 0.47
HDAC4-213ENST00000496347 LRRC8DQ7L1W4 858 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 DHX38Q92620 1227 aaKnown RBP18.01■□□□□ 0.47
HDAC4-213ENST00000496347 PBX4Q9BYU1 374 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 TUT1Q9H6E5 874 aaKnown RBP18.01■□□□□ 0.47
HDAC4-213ENST00000496347 PCDHA6Q9UN73 950 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 PCDHA8Q9Y5H6 950 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 UBIAD1Q9Y5Z9 338 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 SLC4A7Q9Y6M7 1214 aa18.01■□□□□ 0.47
HDAC4-213ENST00000496347 V9GY48 417 aaPredicted RBP18.01■□□□□ 0.47
HDAC4-213ENST00000496347 ESYT2A0FGR8 921 aa18■□□□□ 0.47
HDAC4-213ENST00000496347 SCG2P13521 617 aa18■□□□□ 0.47
HDAC4-213ENST00000496347 KCNA2P16389 499 aa18■□□□□ 0.47
HDAC4-213ENST00000496347 EVCP57679 992 aa18■□□□□ 0.47
HDAC4-213ENST00000496347 DEFB128Q7Z7B8 93 aa18■□□□□ 0.47
HDAC4-213ENST00000496347 CCDC12Q8WUD4 166 aaPredicted RBP18■□□□□ 0.47
HDAC4-213ENST00000496347 CDX2Q99626 313 aaPredicted RBP18■□□□□ 0.47
HDAC4-213ENST00000496347 MAFGO15525 162 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 BAIAP3O94812 1187 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 RUFY3Q7L099 469 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 SERINC5Q86VE9 423 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 ANO3Q9BYT9 981 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 JADE2Q9NQC1 790 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 MSRAQ9UJ68 235 aa17.99■□□□□ 0.47
HDAC4-213ENST00000496347 PTPRSQ13332 1948 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 SMCO2A6NFE2 343 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 ZBBXA8MT70 800 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 CAND2O75155 1236 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 CENPBP07199 599 aaPredicted RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 SMIM10L2AP0DMW4 78 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 SMIM10L2BP0DMW5 78 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 CKBP12277 381 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 ATP2A2P16615 1042 aaKnown RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 ADD1P35611 737 aaKnown RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 SREBF1P36956 1147 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 CLK2P49760 499 aaKnown RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 TRIM71Q2Q1W2 868 aaKnown RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 TRIM50Q86XT4 487 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 SLC9A7Q96T83 725 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 RNF26Q9BY78 433 aaPredicted RBP17.98■□□□□ 0.47
HDAC4-213ENST00000496347 TM6SF1Q9BZW5 370 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 ZNF576Q9H609 170 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 BCAS3Q9H6U6 928 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 ZSWIM6Q9HCJ5 1215 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 CYP46A1Q9Y6A2 500 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 MICAL3Q7RTP6 2002 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 EMSYQ7Z589 1322 aa17.98■□□□□ 0.47
HDAC4-213ENST00000496347 C17orf102A2RUQ5 167 aa17.97■□□□□ 0.47
HDAC4-213ENST00000496347 CXCL10P02778 98 aa17.97■□□□□ 0.47
HDAC4-213ENST00000496347 GNAT1P11488 350 aa17.97■□□□□ 0.47
HDAC4-213ENST00000496347 PBX2P40425 430 aa17.97■□□□□ 0.47
HDAC4-213ENST00000496347 MCTP2Q6DN12 878 aa17.97■□□□□ 0.47
HDAC4-213ENST00000496347 FTOQ9C0B1 505 aaKnown RBP eCLIP17.97■□□□□ 0.47
HDAC4-213ENST00000496347 JPH1Q9HDC5 661 aaPredicted RBP17.97■□□□□ 0.47
HDAC4-213ENST00000496347 GRXCR1A8MXD5 290 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 PRPF3O43395 683 aaKnown RBP17.96■□□□□ 0.47
HDAC4-213ENST00000496347 FOSL2P15408 326 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 TCF7P36402 384 aaPredicted RBP17.96■□□□□ 0.47
HDAC4-213ENST00000496347 AKAP17AQ02040 695 aaKnown RBP17.96■□□□□ 0.47
HDAC4-213ENST00000496347 SP4Q02446 784 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 CEP55Q53EZ4 464 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 REXO1Q8N1G1 1221 aaKnown RBP17.96■□□□□ 0.47
HDAC4-213ENST00000496347 CCDC148Q8NFR7 591 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 ATP6V0A1Q93050 837 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 MXRA8Q9BRK3 442 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 ZMYND12Q9H0C1 365 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 KCNH7Q9NS40 1196 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 PCDHA11Q9Y5I1 949 aa17.96■□□□□ 0.47
HDAC4-213ENST00000496347 NFASCO94856 1347 aa17.96■□□□□ 0.46
HDAC4-213ENST00000496347 ATP9AO75110 1047 aa17.95■□□□□ 0.46
HDAC4-213ENST00000496347 IFNAR1P17181 557 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms